Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/c384998f41e35452be9121ad5fce21/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/493cf948b1d450f8051fba2ea0097a/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/493cf948b1d450f8051fba2ea0097a/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/c384998f41e35452be9121ad5fce21/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T16:54:25.362319Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:25.377285Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:25.377313Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:25.377319Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:25.377323Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX2Fompm'
[2026-06-04T16:54:25.377327Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:25.377332Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:25.377336Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:25.377339Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:25.377343Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:25.377347Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:25.377351Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:25.377355Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:25.377359Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:25.378146Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:25.378210Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:25.384088Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:25.384958Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:25.385265Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:25.385491Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:25.385770Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386067Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386158Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386228Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386345Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386410Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386531Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386593Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386709Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386771Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.386953Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.387186Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.387625Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.387735Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.387986Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.388581Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.389093Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.389325Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.391296Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.391748Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:25.392250Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.392564Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.392691Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.392761Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.392872Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.392935Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393053Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393117Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393233Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393298Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393406Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393475Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.393745Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394145Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394295Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394366Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394488Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394554Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394665Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394733Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394842Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.394903Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.395013Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.395077Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.395893Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396248Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396371Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396439Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396618Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396689Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396802Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396866Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.396982Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.397044Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.397159Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.397222Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.397570Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.397999Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398116Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398184Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398345Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398412Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398525Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398589Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398698Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398766Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398874Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.398935Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.415171Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.415831Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.415938Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.416171Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.416254Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.416346Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.416420Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.417878Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.418525Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:25.418589Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:25.419589Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.420366Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.421136Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.422207Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.423598Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.425737Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.428836Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:25.429711Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:25.432572Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:25.433024Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.436345Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.438527Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:25.439227Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.439900Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:25.446033Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:25.446466Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:25.448715Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:25.505823Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.506528Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.510788Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:25.515077Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.515763Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.518450Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:25.523603Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.524384Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.528286Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:25.989862Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.990626Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:25.994121Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:26.255492Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.256227Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.260065Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:26.320813Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.320895Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.321530Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.321944Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.324973Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T16:54:26.326116Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:26.386217Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.387655Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.390683Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T16:54:26.451799Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.452448Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.456116Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:26.516725Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.517401Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.520001Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T16:54:26.582706Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.583346Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.586540Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:26.847941Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.848673Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.852129Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T16:54:26.912845Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.913553Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.916753Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:26.978105Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.978752Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.982015Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T16:54:26.994810Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.995459Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:26.998546Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:27.027614Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.028283Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.031408Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T16:54:27.092505Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.093204Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.096862Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:27.207772Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.207863Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.208543Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.208978Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.212542Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T16:54:27.213829Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:27.241307Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.241377Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.241972Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.242370Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.245626Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T16:54:27.246312Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:27.274479Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.275092Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.278078Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:27.339551Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.340234Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.343839Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T16:54:27.404778Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.405492Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.409183Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:27.570612Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.571295Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.574524Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T16:54:27.635775Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.636443Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.639780Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:27.669028Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.669650Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.672757Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T16:54:27.733794Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.734500Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.737638Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T16:54:27.739274Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.739812Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.742733Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T16:54:27.771803Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.771882Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.772421Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.772682Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:27.776084Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:27.777067Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:28.188256Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.188838Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.191713Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T16:54:28.252999Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.253593Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.256478Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T16:54:28.285594Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.286155Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.288978Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T16:54:28.318459Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.319001Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.323006Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T16:54:28.351559Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.352093Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.355163Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:28.767282Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.767910Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.771580Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:28.800440Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.800975Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.804478Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T16:54:28.817033Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.817541Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.820332Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:28.849465Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.849993Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.853011Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:28.882075Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.882593Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.885721Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T16:54:28.946653Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.947185Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T16:54:28.950345Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T16:54:29.011176Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.011249Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.011794Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.012132Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.015936Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:29.016995Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:29.077206Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.077711Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.080492Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T16:54:29.141781Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.142251Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.145733Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T16:54:29.174408Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.174919Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.178726Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:29.191519Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.191992Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.194995Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T16:54:29.223975Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.224493Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.227290Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T16:54:29.256482Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.256930Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.259935Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:29.471713Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.472264Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.476939Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T16:54:29.536474Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.536950Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.540230Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T16:54:29.601242Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.633250Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.633668Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:29.637042Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T16:54:29.697898Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.012872Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.013309Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.016569Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T16:54:30.077687Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.077765Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.077789Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.078186Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.079951Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.081839Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T16:54:30.082786Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T16:54:30.144922Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.145001Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.559889Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.560311Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.563276Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T16:54:30.624457Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.688410Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.688756Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:30.691897Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T16:54:30.720914Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.436513Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.436905Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.439661Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T16:54:31.500941Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.501151Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.501255Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.501608Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.502005Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.507177Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:31.507914Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:31.509496Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:31.534857Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.534921Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.534944Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.535138Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.535452Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.538042Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:31.538850Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:31.567450Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.567514Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.567688Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:31.570445Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:31.599687Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:35.975411Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:44.265913Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:44.265913Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] 
[2026-06-04T16:54:44.265913Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:44.265986Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] 
[2026-06-04T16:54:44.265994Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:44.266001Z] [nf-1bc384998f41e35452be9121ad5fce21-3f50f-9jq6h] [624_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec