File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/e0e5f55c6892143c58dfd1c5d70ce5/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
[2026-06-04T16:54:09.682449Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T16:54:09.685284Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T16:54:09.685299Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T16:54:09.685304Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T16:54:09.685309Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXJ9L69a'
[2026-06-04T16:54:09.685313Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T16:54:09.685318Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T16:54:09.685321Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T16:54:09.685325Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T16:54:09.685329Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T16:54:09.685333Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T16:54:09.685337Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T16:54:09.685341Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T16:54:09.685345Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T16:54:09.686112Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T16:54:09.686244Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T16:54:09.692118Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T16:54:09.692967Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T16:54:09.693207Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T16:54:09.693745Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T16:54:09.694096Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.695671Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.695982Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.696162Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.696752Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.697713Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.698015Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.700132Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.700826Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T16:54:09.701300Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702074Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702406Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702543Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702614Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702741Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702810Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.702933Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.703002Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.703127Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.703192Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.703525Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.703927Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.705087Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.705352Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.705475Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.705542Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.705970Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.706037Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.706377Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.706912Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707043Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707127Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707239Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707301Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707416Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707483Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707644Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707713Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.707833Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.708017Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.708506Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709015Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709143Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709210Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709333Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709399Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709515Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709666Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709784Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.709891Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.710263Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.710866Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.710995Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711058Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711177Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711241Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711357Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711480Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711589Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711657Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711774Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.711835Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.712014Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.712442Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.726745Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.726882Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.726953Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727150Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727225Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727325Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727398Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727508Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727579Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T16:54:09.727633Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T16:54:09.736265Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.736945Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.739467Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742020Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.742472Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:09.742763Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.743397Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.744121Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.747074Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.747746Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:09.748346Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.755842Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:09.756665Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:09.763031Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:09.766085Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:09.766196Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:09.767649Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:09.914834Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.914930Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.914960Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.914989Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.915922Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.916306Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.916764Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.917656Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.923661Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.924200Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:09.927434Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:09.931992Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:09.932800Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:09.933561Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:09.937071Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:10.349403Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.350328Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.354849Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:10.616604Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.617534Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.621567Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:10.732358Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.733277Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.739755Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:10.898815Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.899736Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:10.903605Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:11.014880Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.015790Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.018950Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T16:54:11.080463Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.081351Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.084964Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:11.196457Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.196570Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.197392Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.197757Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.201600Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T16:54:11.202803Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T16:54:11.262922Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.263041Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.263951Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.264471Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.268901Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T16:54:11.269622Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T16:54:11.329166Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.329294Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.329349Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.329393Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.330438Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.330925Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.331551Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.333777Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.335547Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T16:54:11.340425Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T16:54:11.342774Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:11.343424Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:11.402164Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.402261Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.403296Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.403799Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.408080Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T16:54:11.409014Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:11.469006Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.470024Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.472719Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.473745Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.474072Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T16:54:11.477614Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T16:54:11.538341Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.538450Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.539339Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.539856Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.544953Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:11.546199Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:11.655573Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.656415Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.659947Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T16:54:11.721353Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.722114Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.725655Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T16:54:11.787000Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.787765Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.791252Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:11.952771Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.953750Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:11.957347Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T16:54:12.018924Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.019868Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.024833Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:12.287062Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.287798Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.292307Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T16:54:12.353282Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.354108Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.359125Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T16:54:12.418733Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.419385Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.423775Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:12.484974Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.485726Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.490301Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:12.519053Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.519775Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.522980Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T16:54:12.584211Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.585159Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.589775Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T16:54:12.618511Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.619393Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.637208Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T16:54:12.652592Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.653470Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.658065Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:12.686171Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.687060Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.691383Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:12.752194Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.753364Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.756192Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.757079Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.757397Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:12.760585Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T16:54:12.821730Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.822529Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.828814Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T16:54:12.889677Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.890524Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.894902Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T16:54:12.955741Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.956581Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T16:54:12.960798Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T16:54:13.021864Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.022740Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.027817Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:13.089019Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.089861Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.094806Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T16:54:13.154962Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.155682Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.160202Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:13.160616Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.161282Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.165192Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T16:54:13.225871Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.691459Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.691566Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.692085Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.693067Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.698017Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T16:54:13.698475Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T16:54:13.760063Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:13.760207Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.025235Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.025805Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.030744Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T16:54:14.091575Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.256418Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.256928Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.260701Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T16:54:14.321788Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.586849Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.587454Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.591740Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T16:54:14.652616Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.668652Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.669199Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T16:54:14.672687Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T16:54:14.734426Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.351222Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.351764Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.355753Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T16:54:15.416612Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.416949Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.417139Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.417496Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.418797Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.425148Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T16:54:15.428692Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T16:54:15.454707Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T16:54:15.483514Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.483608Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.483635Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.483929Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.484515Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.489388Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T16:54:15.490742Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T16:54:15.550367Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.550480Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.550774Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T16:54:15.554058Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T16:54:15.615461Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T16:54:20.294049Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T16:54:28.573963Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T16:54:28.573963Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] 
[2026-06-04T16:54:28.573963Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T16:54:28.574063Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] 
[2026-06-04T16:54:28.574072Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T16:54:28.574080Z] [nf-cce0e5f55c6892143c58dfd1c5d70ce5-eed55-2xr8n] [678_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec