File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/1c356d3802bf24045b3f6ae4b20afb/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_38uriuv because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:08:35,944 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:08:36,736 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:08:36,900 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:08:37,767 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:08:37,910 - cnv_pipe.batch.run_model - INFO - Processing cluster 1041 with 153 probes
2026-06-04 17:08:38,284 - cnv_pipe.batch.run_model.cluster1041 - INFO - Child process started for cluster 1041 with 153 probes
2026-06-04 17:09:22,854 - cnv_pipe.batch.run_model.cluster1041 - INFO - Child process finished cluster 1041. Wrote cluster_1041_samples.csv and cluster_1041_params.csv
2026-06-04 17:09:22,855 - cnv_pipe.batch.run_model - INFO - Cluster 1041 finished in 44.95 seconds. Status: SUCCESS