.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/fe04c32077ca02af7491f9cdb5c1ee/.command.err
Size: 63.3 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)
Attempt
Content

[2026-06-04T17:03:39.605436Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:39.606963Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:39.606983Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:39.606989Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:39.606994Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9Fmb4F'
[2026-06-04T17:03:39.606998Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:39.607005Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:39.607009Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:39.607013Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:03:39.607017Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:39.607021Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:39.607024Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:39.607028Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:39.607032Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:39.607787Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:39.607882Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:39.613713Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:39.614476Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:39.614720Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:39.615051Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:39.615287Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.615656Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.615758Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.615838Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.615966Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.616042Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.616415Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.616911Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.617041Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.617194Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.617277Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.619617Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.619823Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620018Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:39.620184Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620403Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620524Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620589Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620704Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620765Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620947Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621017Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621127Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621196Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621303Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621363Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621551Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621860Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621977Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622043Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622154Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622220Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622335Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622396Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622507Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622572Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622681Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622743Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622853Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622971Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.623532Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.623603Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.623712Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.623777Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.624220Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.624281Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.624396Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.624498Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625048Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625121Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625238Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625306Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625428Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625508Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625662Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625733Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625855Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625924Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.626261Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.626622Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.626734Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.626795Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.626902Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.626962Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.627066Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.627131Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.627239Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.627300Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.641633Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642034Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642115Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642276Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642342Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642429Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642498Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.643712Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.643853Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.644422Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:39.647604Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.648157Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.648433Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.648815Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.649567Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.652066Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:39.652887Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.654847Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:39.656457Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:39.656699Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.656874Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:39.657472Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.658415Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.661815Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:39.665510Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:39.666460Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:39.666655Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:39.774347Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.774422Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.775180Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.775992Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.779575Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:39.780886Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:40.243465Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.244253Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.247235Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:40.859159Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.859889Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.862936Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:41.025837Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.026613Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.029434Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:41.042704Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.043358Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.046134Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:41.108533Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.109255Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.112095Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:41.173595Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.174323Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.177541Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:41.239131Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.239827Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.242403Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:41.353880Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.354583Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.357352Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:41.371849Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.372501Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.374908Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:41.436560Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.436627Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.437261Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.437744Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.440732Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:41.441500Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:41.470971Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.471038Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.471676Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.472198Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.474081Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:41.476187Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:41.505639Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.506312Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.509087Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:41.539321Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.540230Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.540478Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.541653Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.544638Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:41.545683Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:41.655736Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.656444Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.659205Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:41.770635Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.771339Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.773882Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:41.835718Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.836313Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.839189Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:41.868498Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.869113Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.871706Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:41.983219Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.983906Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.986500Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:42.015944Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.016006Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.016583Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.018316Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.019696Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:42.020877Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:42.082519Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.082626Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.083223Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.083730Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.086279Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:42.087062Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:42.118069Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.118675Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.121302Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:42.150506Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.151099Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.153810Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:42.215376Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.215983Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.218832Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:42.280193Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.280768Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.283270Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:42.312795Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.313303Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.315551Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:42.345262Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.345785Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.348571Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:42.377781Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.378297Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.380904Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:42.793257Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.793857Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.796206Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:42.826998Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.827490Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.830536Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:42.942085Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.942650Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.945072Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:43.006709Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.007187Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.010072Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:43.071451Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.071537Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.072024Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.072617Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.075485Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:43.076678Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:43.106152Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.106692Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.109520Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:43.109710Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.110274Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.112670Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:43.142059Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.142583Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.145543Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:43.206618Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.207163Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.209672Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:43.239070Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.239517Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.241868Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:43.271366Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.271818Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.274263Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:43.536427Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.536988Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.539587Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:43.569980Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.570066Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.570482Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.572170Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.573088Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:43.575402Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:43.636721Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.636794Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.637195Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.637706Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.640117Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:43.641212Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:43.671146Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.885335Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.885812Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.888477Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:43.917790Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.981654Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.982034Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.984235Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:44.014068Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.178134Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.178580Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.181212Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:44.211563Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.475901Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.476354Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.478934Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:44.508293Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.622199Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.622598Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.625266Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:44.654579Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.818628Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.819033Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.821522Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:44.883208Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.883627Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.885926Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:44.947656Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.462339Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.462739Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.465110Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:45.494809Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.495026Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.495126Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.495701Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.497416Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.498815Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:45.499454Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:45.501789Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:45.530387Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.530443Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.530466Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.530666Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.532253Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.532759Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:45.534712Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:45.564328Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.564372Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.564521Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566978Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:45.596223Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.168919Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:58.495353Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:58.495353Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] 
[2026-06-04T17:03:58.495353Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:58.495431Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] 
[2026-06-04T17:03:58.495438Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:58.495445Z] [nf-28fe04c32077ca02af7491f9cdb5c1ee-4725d-vl5nt] [594_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec