.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/d74c69f4960e9ef536592e1cd32585/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt
Content

[2026-06-04T17:03:40.327260Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:40.328316Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:40.328344Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:40.328350Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:40.328355Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXGc0opK'
[2026-06-04T17:03:40.328358Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:40.328365Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:40.328369Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:40.328372Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T17:03:40.328376Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:40.328379Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:40.328383Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:40.328386Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:40.328390Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:40.329367Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:40.329429Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:40.335150Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:40.335809Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:40.336131Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:40.336358Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:40.336816Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.337345Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.337445Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.337517Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.337639Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.337811Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.338136Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.338241Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.338588Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.338694Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.338905Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.339031Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.339194Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.339400Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.339547Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.339948Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.340473Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.340793Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.340876Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.341146Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.341333Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.342871Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.343281Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.343512Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:40.343639Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.343717Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.343835Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.343900Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344008Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344079Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344187Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344253Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344398Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344470Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344589Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.344659Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345080Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345445Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345560Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345620Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345729Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345790Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345900Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.345961Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.346066Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.346131Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.346239Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.346300Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.346573Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347106Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347530Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347595Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347701Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347761Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347869Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.347928Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348034Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348095Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348198Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348261Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348365Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348424Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348560Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.348684Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349229Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349300Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349409Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349470Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349613Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349677Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349782Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349846Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.349950Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.350013Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.351380Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.351914Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352042Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352112Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352222Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352286Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352394Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352454Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352563Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352624Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352731Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352796Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352903Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352973Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.353297Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.353987Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354105Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354354Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354482Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354562Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354671Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354736Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.370342Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.370740Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.370906Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.371739Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.371945Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.372154Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.372233Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.372415Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.372486Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.372817Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.373001Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.373155Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.373494Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:40.373757Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.374793Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.375355Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.376813Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.377932Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.380265Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:40.382662Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:40.383113Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.385694Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:40.391448Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:40.394155Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:40.396487Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:40.399520Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:40.460748Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.460810Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.461662Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.462186Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.465302Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:40.468345Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:41.331469Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.332560Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.335637Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:41.497380Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.498396Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.501242Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:41.742488Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:41.763410Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.763524Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.764540Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.765070Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.768703Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:41.769352Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:41.931045Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.931148Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.932122Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.932614Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.935738Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:41.936096Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:41.997650Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.998656Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.001363Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:42.113355Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.113454Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.114602Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.115098Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.117920Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:42.118862Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:42.147672Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.147750Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.148687Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.149324Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.152262Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:42.153344Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:42.314432Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.315448Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.318218Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:42.379699Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.380705Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.383490Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:42.896232Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.897236Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.900454Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:42.961453Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.962457Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.965603Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:43.026807Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.028021Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.030767Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:43.092121Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.093087Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.096193Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:43.207456Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.208369Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.211270Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:43.272678Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.273634Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.276320Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:43.338225Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339198Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.342207Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:43.347605Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.348444Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.351060Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:43.564388Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.565302Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.568135Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:43.582351Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.583186Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.586274Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:43.599254Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.600076Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.602581Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:43.633144Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.634024Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.636384Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:43.641794Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.642605Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.644919Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:43.675017Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.675102Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.675945Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.676540Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.679216Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:43.680407Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:43.708483Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.709380Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.711815Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.712768Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:43.712898Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.715803Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:43.744952Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.745054Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.745974Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.746537Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.749385Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:43.750269Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:43.779423Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.780266Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.783303Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:43.784126Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.784914Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.787312Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:43.817090Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.817178Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.817939Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.818595Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.821376Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:43.822868Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:43.852156Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.852987Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.855800Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:43.967337Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.968175Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.970802Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:44.000381Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001184Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004106Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:44.265860Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.265933Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.265975Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.266708Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.267002Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.267511Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.270402Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:44.271786Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:44.272966Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:44.332541Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.332639Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.333391Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.333697Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.336536Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:44.337186Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:44.397991Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.398101Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.398856Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.399545Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.402770Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:44.403967Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:44.417487Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.417582Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.418419Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.418682Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.421468Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:44.422368Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:44.482884Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.482993Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.483721Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.484148Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.487268Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:44.488415Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:44.748943Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.749644Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.752324Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:44.781928Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.782702Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.785575Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:44.846732Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.847470Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.850120Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:44.879404Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.880330Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.883253Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:45.044685Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.045431Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.048460Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:45.109839Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.110761Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.113913Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:45.126792Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.127629Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.130373Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:45.191546Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.192475Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.195440Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:45.406748Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.407564Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.410578Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:45.471816Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.472988Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.476456Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:45.587303Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.588302Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.591292Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:45.652362Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.653318Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.655975Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:45.717205Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.718176Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.721075Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:45.782221Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.783108Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.785889Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:45.997361Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.998258Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.001184Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:46.062332Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.063093Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.066101Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:46.094968Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.095870Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.098485Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:46.099459Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.100198Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.102903Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:46.132048Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.133117Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.136115Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:46.197197Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.197313Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.198165Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.198534Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.201797Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:46.202473Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:46.262626Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.262775Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.263756Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.264167Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.267497Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:46.268349Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:46.328155Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.328256Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.328281Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.328844Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.330644Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.331275Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.332961Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:46.333758Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:46.335893Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:46.365190Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.365265Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.365764Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.366373Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.369566Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:46.370517Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:46.399845Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.400409Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.403007Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:46.403919Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.467968Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.500099Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.500631Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.503324Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:46.533544Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.565519Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.566047Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.568612Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:46.630438Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.945032Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.945527Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.946161Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.946810Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.949487Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:46.950292Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:47.012387Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.012470Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.177011Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.177497Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.180143Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:47.241926Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.606630Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.607292Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.610125Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:47.671439Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.671785Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.671949Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.672647Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.672981Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.676801Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:47.679319Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:47.704863Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.705087Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:47.705713Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.706046Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.706110Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.706430Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.709079Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:47.710126Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:47.738579Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.738646Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.738826Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.741320Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:47.802741Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.973445Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:59.217770Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:59.217770Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] 
[2026-06-04T17:03:59.217770Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:59.217833Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] 
[2026-06-04T17:03:59.217840Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:59.217846Z] [nf-c5d74c69f4960e9ef536592e1cd32585-24dfd-tpsbf] [586_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec