Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/b5f9a945464b342d77f1ac0a3ca76a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/b5f9a945464b342d77f1ac0a3ca76a/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQSlvIZ/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQSlvIZ/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQSlvIZ/chr6_138229684-138229952.bed.gz.tbi
[2026-06-04T17:03:40.473639Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:40.474660Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:40.474670Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:40.474675Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:40.474679Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQSlvIZ'
[2026-06-04T17:03:40.474684Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:40.474689Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:40.474708Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:40.474714Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:03:40.474719Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:40.474722Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:40.474727Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:40.474730Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:40.474737Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:40.475275Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:40.475382Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:40.481120Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:40.481861Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:40.482054Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:40.482545Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:40.482881Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.483424Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.483518Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.483592Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.483711Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.483777Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.483897Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.484026Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.484490Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.484779Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.484857Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.485135Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.485246Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.485926Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.486372Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.487630Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.488095Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.488360Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:40.488779Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489086Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489543Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489617Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489728Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489796Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489905Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.489970Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490083Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490149Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490258Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490322Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490554Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490814Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.490964Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491026Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491139Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491201Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491310Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491373Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491524Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491590Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491711Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.491781Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492010Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492433Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492546Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492608Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492720Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492786Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.492950Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.493015Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.493124Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.493204Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.493328Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.493390Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.493691Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494097Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494213Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494279Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494387Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494452Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494564Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494627Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494738Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494804Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494910Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.494977Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.495088Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.495218Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.495811Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.495876Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.495984Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.496051Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.496158Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.496223Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.497635Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498258Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498444Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498518Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498633Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498701Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498815Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.498877Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499035Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499099Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499214Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499281Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499470Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499865Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.500897Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.501010Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.501148Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.501256Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.501382Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.501605Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.502040Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.502880Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503094Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503170Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503296Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503367Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503548Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503618Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503734Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.503924Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.504929Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.505003Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.505113Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.505190Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.505310Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.505377Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.507910Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.508672Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.508944Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.509013Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.523072Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.523594Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.523738Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.523973Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.525114Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.525272Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.525423Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.525785Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.526371Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.526594Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.527076Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.527977Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.529656Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.530946Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.531383Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.532223Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.533322Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:40.534494Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.537147Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:40.538206Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.541065Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:40.547575Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:40.552257Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:03:40.556602Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:40.563970Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:40.565740Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:03:40.571084Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:03:40.634690Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.635684Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.641898Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:03:40.701558Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.701645Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.702710Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.703114Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.710927Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:03:40.712191Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:41.473082Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.474338Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.478135Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:41.639492Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.640699Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.643989Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:03:41.705098Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.706765Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.709950Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:03:41.771090Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.772993Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.774015Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.775907Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.779595Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:03:41.792482Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.793819Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.796786Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:41.801794Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.802712Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.805829Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:03:41.867039Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.868084Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.872043Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:41.932692Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.933774Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.937801Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:03:42.098774Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.099982Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.103608Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:42.164492Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.165604Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.170623Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:42.229903Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.231050Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.234834Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:42.295612Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.296732Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.299725Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:42.361197Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.361302Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.362480Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.362865Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.366732Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:42.367690Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:03:42.427869Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.428975Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.432371Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:03:42.593877Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.594930Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.597983Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:03:42.659300Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.660434Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.663453Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:42.724690Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.725822Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.729296Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:03:42.940892Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.942204Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.945697Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:03:43.126063Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:43.157200Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.158345Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.162303Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:03:43.223282Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.224371Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.227777Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:03:43.489784Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.490899Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.494693Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:03:43.555597Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.556721Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.560395Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:43.621544Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.622590Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.626325Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:43.687551Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.687679Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.688703Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.689113Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.692932Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:03:43.694046Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:03:43.754709Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.754815Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.755977Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.756387Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.760538Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:03:43.762174Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:03:43.821790Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.822812Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.826373Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:03:44.088533Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.089723Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.093005Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:03:44.204758Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.205841Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.208642Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:03:44.270080Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.271093Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.273995Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:44.335081Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.336097Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.338835Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:44.400277Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.401183Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.404245Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:44.433102Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.433190Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.434155Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.434556Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.437954Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:44.438682Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:44.499006Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.499105Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.499981Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.500330Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.503746Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:03:44.504963Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:03:44.516618Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.517799Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.520438Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:03:44.549920Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.550036Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.550928Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.551270Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.554373Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:03:44.555161Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:44.616421Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.616503Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.617401Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.617874Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.621213Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:44.622507Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:03:44.683994Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.684940Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.687932Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:44.718157Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.719150Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.722008Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:44.783247Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.783349Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.784233Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.786149Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.787020Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:03:44.789371Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:44.850654Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.850746Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.851713Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.852501Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.855723Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:44.856613Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:03:44.917219Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.918111Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.920912Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:44.982449Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.982535Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.983381Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.983961Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.987074Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:03:44.988152Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:45.016162Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.017033Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.020355Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:45.081165Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.082227Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.085752Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:03:45.196937Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.197888Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.201042Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:45.262279Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.262379Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.263179Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.263656Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.266632Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:45.267582Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:03:45.328010Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.328111Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.328929Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.329260Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.332715Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:03:45.334018Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:45.361344Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.362269Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.364528Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.365497Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.365949Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:03:45.368515Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:45.397960Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.399090Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.399442Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.402170Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.403008Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:03:45.405609Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:03:45.434860Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.435587Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.439262Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:45.499976Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.500704Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.504269Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:45.532919Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.533786Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.536806Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:03:45.565671Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566410Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.569213Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:03:45.730813Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.731819Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.735074Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:03:45.763791Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.764565Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.768164Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:45.768569Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.769190Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.772773Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:45.833389Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.833475Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.834190Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.834457Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.837452Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:45.838386Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:03:45.899705Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.899790Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.900441Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.900785Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.904776Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:45.906072Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:03:45.965467Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.966223Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.969502Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:46.030744Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.031630Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.034829Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:46.063985Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.064660Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.068106Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:46.580047Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.580862Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.583913Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:46.645381Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.645479Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.646186Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.646503Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.650322Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:46.651344Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:46.654752Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.655435Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.658628Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:03:46.687527Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.688225Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.691599Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:03:46.695834Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.696387Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.699411Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:46.728379Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.728459Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.729048Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.729403Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.732370Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:03:46.733574Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:46.761573Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.762200Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.765036Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:03:46.778091Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.778739Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.781386Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:03:46.794456Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.795060Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.798284Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:46.798618Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.799171Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.802374Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:46.815077Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.815668Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.818791Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:46.834083Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.834747Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.839131Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:03:46.843477Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.844061Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.846900Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:03:46.847691Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.848164Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.850910Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:03:46.880032Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.880121Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.880838Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.881387Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.882043Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.884996Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:03:46.888477Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:46.916916Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.917016Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.917696Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.920602Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:46.982192Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.046643Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.047155Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.049886Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:47.111234Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.127299Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.127804Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.130434Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:47.191950Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.256017Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.256509Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.259319Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:47.264294Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.264809Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.267115Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:03:47.296794Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.296872Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.312998Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.313645Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.316846Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:48.378047Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.378455Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.378652Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.379130Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.379487Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.385888Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:48.386705Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:48.387211Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:48.443958Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.444102Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.444127Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.444419Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.445010Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.448212Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:48.449387Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:48.477556Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.480933Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.481120Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.484094Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:48.513559Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.134055Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:59.364129Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:59.364129Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] 
[2026-06-04T17:03:59.364129Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:59.364228Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] 
[2026-06-04T17:03:59.364235Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:59.364242Z] [nf-83b5f9a945464b342d77f1ac0a3ca76a-79981-6nn88] [602_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec