Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/27fd16f7c5574843addbafd129254b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/27fd16f7c5574843addbafd129254b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/8eee459d74eba64dfe5bc8368d5cb4/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/8eee459d74eba64dfe5bc8368d5cb4/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:43.991046Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:43.991855Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:43.991867Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:43.991871Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:43.991875Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgcW1QV'
[2026-06-04T17:03:43.991879Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:43.991883Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:43.991887Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:43.991891Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-04T17:03:43.991895Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:43.991903Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:43.991906Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:43.991911Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:43.991915Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:43.992465Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:43.992530Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:43.998051Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:43.998700Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:43.999158Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:43.999754Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:44.000412Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001304Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001517Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001839Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002447Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002725Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002953Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003411Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003740Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004805Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005239Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.006259Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007222Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007499Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007757Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:44.008298Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008702Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008771Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008882Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008945Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009147Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009216Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009326Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009392Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009509Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009573Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.009964Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010349Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010474Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010538Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010651Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010727Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010838Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.010900Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.011008Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.011070Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.011179Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.011245Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.011596Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012008Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012127Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012188Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012334Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012406Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012517Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012581Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012701Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.012842Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.013259Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.013526Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.014206Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.014679Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.014803Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.014864Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.014974Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015036Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015147Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015210Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015318Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015382Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015491Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015550Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.015729Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.016150Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.016714Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.016788Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.016904Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.016964Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.017073Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.017137Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.017243Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.017305Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.017410Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.017476Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.032878Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033015Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033097Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033301Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033372Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033459Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033522Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033641Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033711Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033757Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:44.036619Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.037448Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.037709Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.038606Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.039909Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.040862Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.042964Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.043700Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.044271Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:44.046308Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.050019Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:44.056068Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:44.059437Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:44.063841Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:44.064496Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:44.068158Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:44.070523Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:44.169926Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.170024Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.170059Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.171062Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.171633Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.172246Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.177249Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:44.178920Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:44.181536Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:44.791205Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.792212Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.795360Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:45.007184Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.008165Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.011493Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:45.172933Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.173890Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.177554Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:45.339003Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.339948Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.344046Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:45.806071Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.807013Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.810217Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:45.871330Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.871400Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.872202Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.874109Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.875061Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:45.877477Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:45.906652Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.906750Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.906774Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.907788Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.908439Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.911602Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:45.912135Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.912729Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.912953Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:45.915392Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.916134Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:45.918908Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:45.947891Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.947975Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.948770Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.949044Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.952428Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:45.953153Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:46.514616Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.515476Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.518588Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:46.579985Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.580849Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.584279Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:46.646341Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.646446Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.647199Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.647746Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.651390Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:46.652494Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:46.713890Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.713994Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.714738Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.715321Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.718813Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:46.719922Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:46.781005Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.781741Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.785814Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:46.846478Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.847275Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.851028Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:47.062019Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.062907Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.066046Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:47.127389Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.128170Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.131869Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:47.144390Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.145116Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.148003Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:47.209478Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.209572Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.210265Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.210841Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.215234Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:47.216721Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:47.276348Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.277098Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.280396Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:47.592438Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.593248Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.596955Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:47.609800Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.610534Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.613956Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:48.226540Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.227318Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.230636Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:48.243502Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.244102Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.247802Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:48.308987Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.309673Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.312876Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:48.342116Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.342777Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.346121Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:48.346830Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.347387Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.349946Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:48.379635Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.380220Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.382732Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:48.412121Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.412194Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.412753Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.413313Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.415337Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.415721Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:48.417773Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:48.417960Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.420252Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:48.449860Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.450137Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.450896Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.451216Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.451673Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.453932Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.455550Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:48.457355Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:48.458426Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:48.486169Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.486675Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.488943Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:48.550753Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.551325Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.555155Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:48.816602Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.817261Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.820904Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:48.881900Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.882587Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.886060Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:48.947079Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.947656Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.950820Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:48.979931Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.980509Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.983702Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:48.984560Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.985089Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.988556Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:49.017270Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.017784Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.020855Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:49.021420Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.021889Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.024591Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:49.053666Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.054148Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.056631Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:49.061922Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.062494Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.065041Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:49.070144Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.070597Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.073164Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:49.102550Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.103034Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.105562Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.106105Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.106751Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:49.109153Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:49.123313Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.123761Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.126090Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.126725Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.127228Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:49.129703Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:49.158789Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.162569Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.178334Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.643207Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.643713Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.646306Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:49.675937Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.739913Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.740351Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.742732Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:49.804350Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.918461Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.918911Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.922007Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:49.983034Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.147254Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.147688Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.150241Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:50.180949Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.545734Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.546137Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.549721Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:50.610412Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.610677Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.610791Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.611323Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.613150Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.613633Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:50.617174Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:50.618636Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:50.645903Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.645978Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.646196Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.648922Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:50.649852Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.650091Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.652822Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:50.682283Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.682355Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.682528Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.684814Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:50.746632Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:54.568061Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:04:02.880239Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:04:02.880239Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] 
[2026-06-04T17:04:02.880239Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:04:02.880334Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] 
[2026-06-04T17:04:02.880353Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:04:02.880360Z] [nf-3027fd16f7c5574843addbafd129254b-690da-f87wg] [594_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec