Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8bd0c230e524b7e1388b18e755b8fa/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e975b25add5a29806217339ea149cc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e975b25add5a29806217339ea149cc/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-pl_bnrfi because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:08:10,114 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:08:10,937 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:08:11,113 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:08:12,036 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:08:12,212 - cnv_pipe.batch.run_model - INFO - Processing cluster 917 with 181 probes
2026-06-04 17:08:12,578 - cnv_pipe.batch.run_model.cluster917 - INFO - Child process started for cluster 917 with 181 probes
2026-06-04 17:09:07,716 - cnv_pipe.batch.run_model.cluster917 - INFO - Child process finished cluster 917. Wrote cluster_917_samples.csv and cluster_917_params.csv
2026-06-04 17:09:07,718 - cnv_pipe.batch.run_model - INFO - Cluster 917 finished in 55.51 seconds. Status: SUCCESS