[2026-06-04T17:03:33.889498Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:33.891709Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:33.891724Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:33.891729Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:33.891734Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXkxzu5m'
[2026-06-04T17:03:33.891738Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:33.891743Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:33.891747Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:33.891750Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:03:33.891754Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:33.891758Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:33.891761Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:33.891765Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:33.891769Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:33.892412Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:33.892509Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:33.898130Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:33.898893Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:33.899106Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:33.899327Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:33.899622Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.900375Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.900467Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.900541Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.900656Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.900804Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.901282Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.901422Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.901534Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.902244Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.902523Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.904130Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:33.904419Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.904608Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.904782Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.904853Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.904972Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905041Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905283Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905542Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905744Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905810Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905919Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.905985Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.906108Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.906190Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.906353Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.906438Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.906609Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.906782Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.907213Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.907326Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.907488Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.907606Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.907771Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.907867Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.908032Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.908145Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.908548Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.908999Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.909190Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.909286Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.909473Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.909647Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.909832Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.909939Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.910304Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.910830Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.910985Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911061Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911178Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911251Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911365Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911429Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911562Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911629Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.911813Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.912342Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.912846Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.912916Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913025Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913086Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913198Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913261Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913375Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913443Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913552Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913613Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913722Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913819Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.914101Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.914602Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.914712Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.914776Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.931816Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.932441Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.932574Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.932705Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.933512Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.933710Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.934022Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.934077Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.934845Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.935073Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.935744Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.936025Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.936821Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.938091Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.938839Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.939314Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.940042Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:33.940434Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.940952Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:33.943874Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:33.946224Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:33.949549Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:33.951798Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:33.953841Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:33.958460Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:33.959780Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:33.960572Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:34.024539Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.024609Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.025286Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.025562Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.028547Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:34.029538Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:34.390838Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.391754Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.394801Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:34.657053Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.657949Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.660888Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:34.872716Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.873614Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.876622Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:34.905532Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.905625Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.906381Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.906662Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.909338Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:34.910310Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:34.938656Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.939483Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.942352Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:35.154094Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.154202Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.154960Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.155436Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.158863Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:35.320503Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.321336Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.324187Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:35.337413Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.338156Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.340719Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:35.353884Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.354512Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.356940Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:35.386462Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.387231Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.389958Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:35.852570Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.853289Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.856047Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:35.967750Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.968574Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.971265Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:36.000490Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.001190Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.004291Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:36.065715Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.066494Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.069144Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:36.098568Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.099311Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.101777Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:36.115106Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.115842Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.118460Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:36.131606Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.132232Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.134617Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:36.196349Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.197114Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.199741Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:36.261207Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.261985Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.264599Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:36.326328Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.327077Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.329672Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:36.359354Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.360119Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.363171Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:36.775324Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.776083Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.778907Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:37.043263Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:37.090943Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.091038Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.091746Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.092078Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.094982Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:37.096014Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:37.124540Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.125261Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.127893Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:37.157362Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.158047Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.161206Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:37.222514Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.223215Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.225815Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:37.255059Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.255678Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.258114Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:37.319760Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.320449Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.323161Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:37.352565Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.353214Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.355624Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:37.385134Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.385738Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.388185Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:37.449741Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.450527Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.453145Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:37.514515Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.515301Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.517976Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:37.579283Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.580203Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.583170Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:37.644447Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.645111Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.647912Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:37.677498Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.678117Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.680706Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:37.792184Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.792857Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.795741Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:37.800677Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.801289Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.803691Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:37.833218Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.833284Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.833782Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.834026Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.836795Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:37.837950Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:37.866349Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.866424Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.866974Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.867276Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.870236Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:37.871414Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:37.931768Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.931838Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.932343Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.932621Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.935163Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:37.936227Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:37.965502Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.965603Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.966114Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.966375Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.969151Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:37.970182Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:37.998515Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.999024Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.001291Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:38.030903Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.030972Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.031431Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.031710Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.034340Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:38.035063Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:38.063995Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.064078Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.064584Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.064866Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.067736Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:38.068052Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:38.129616Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.129715Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.130205Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.130584Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.133303Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:38.134053Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:38.195984Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.196523Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.198955Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:38.228567Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.260745Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.261324Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.264165Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:38.293541Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.407860Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.408355Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.411171Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:38.440381Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.705160Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.705670Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.708019Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:38.769797Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.769872Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.770298Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.772572Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:38.834392Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.998727Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.999185Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.001583Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:39.031053Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.063265Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.063685Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.065912Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:39.095562Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.761125Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.761599Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.764190Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:39.794582Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.794879Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.795022Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.795337Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.795826Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.800534Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:39.800884Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:39.826039Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:39.829142Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.829207Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.829230Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.829451Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.830031Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.832911Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:39.833395Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:39.862053Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.862116Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.862315Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.864531Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:39.895111Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.521175Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:52.780167Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:52.780167Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner]
[2026-06-04T17:03:52.780167Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-04T17:03:52.780233Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner]
[2026-06-04T17:03:52.780245Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:52.780252Z] [nf-a4ca167f5bf15a714a6b77b4b96fced9-e2b43-cwgbt] [595_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec