File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/c3ba34030eff20979d504bb11eb896/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/c3ba34030eff20979d504bb11eb896/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/c3ba34030eff20979d504bb11eb896/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:48.187782Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:48.188796Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:48.188808Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:48.188812Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:48.188817Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXbqkf6T'
[2026-06-04T17:03:48.188821Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:48.188826Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:48.188829Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:48.188833Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:03:48.188836Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:48.188840Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:48.188844Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:48.188847Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:48.188852Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:48.189580Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:48.189782Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:48.196361Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:48.197304Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:48.197635Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:48.198135Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:48.198418Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.199099Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.199200Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.199272Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.199389Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.199454Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.199936Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.200216Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.200281Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.200643Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.200910Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.201589Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.201967Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.202176Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.204208Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.204856Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.205027Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.205077Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:48.205375Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.205461Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.205682Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.205926Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.206278Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.206350Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.206482Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.206547Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.206962Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.207028Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.207140Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.207205Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.207522Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.207913Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.208129Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.208547Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.208664Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.208727Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.208839Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.208908Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209024Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209086Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209197Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209257Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209370Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209436Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209545Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.209728Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210190Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210255Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210419Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210484Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210594Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210665Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210773Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210834Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.210946Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.211010Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.211119Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.211244Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.211585Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.212072Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.212698Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.212762Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.212873Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.212937Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228165Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228395Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228470Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228631Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228702Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228788Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228855Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.228967Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.229034Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:48.229081Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:48.237336Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.239229Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.239683Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.240224Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.241952Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.242605Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:03:48.243135Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.243908Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.244655Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.245387Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.247999Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:48.250855Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:03:48.253748Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:48.258005Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:48.259863Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:03:48.261039Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:03:48.262217Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:48.363191Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.363270Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.363292Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.363313Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.363924Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.364376Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.364930Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.365784Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.371886Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:48.372432Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:48.375388Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:03:48.403204Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:48.432982Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.433054Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.433080Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.433737Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.434088Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.434838Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.437216Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:48.440236Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:03:48.441048Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:03:48.851460Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.851561Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.852320Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.852876Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.857185Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:03:48.858024Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:03:48.917910Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.918003Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.918760Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.919202Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.923022Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:03:48.924324Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:48.984225Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.984376Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.985052Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.985413Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.988740Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:48.990374Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:03:49.049704Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.049808Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.050450Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.050932Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.055071Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:03:49.056338Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:49.116687Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.117445Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.120674Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:49.181823Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.182601Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.186499Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:49.247444Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.248175Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.252126Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:03:49.256407Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.256999Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.260727Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:03:49.321326Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.322075Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.326069Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:49.386953Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.387684Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.391562Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:03:49.395606Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.396166Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.399293Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:03:49.428284Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.428921Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.432817Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:03:49.433041Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.433583Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.437309Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:49.465986Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.466636Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.469495Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:49.498836Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.499438Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.502685Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:03:49.507660Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.508208Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.510777Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:03:49.772917Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.773581Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.776989Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:03:49.838144Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.838810Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.842089Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:03:49.903312Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.903939Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.907505Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:49.937002Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.937542Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.940802Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:49.941133Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.941626Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.945277Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:03:49.973824Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.973889Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.974410Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.974760Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.978475Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:49.979299Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:03:50.039380Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.039461Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.039960Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.040573Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.044923Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:03:50.046117Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:03:50.105795Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.106390Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.109756Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:50.171091Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.171650Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.175589Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:50.235958Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.236050Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.236563Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.236928Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.240416Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:03:50.241113Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:03:50.301492Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.302046Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.306027Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:50.334800Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.335591Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.338654Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:03:50.367873Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.368681Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.369306Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.371653Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.372564Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:50.375745Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:03:50.436752Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.437338Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.441230Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:03:50.552448Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.553035Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.556521Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:03:50.617785Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.618354Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.622161Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:03:50.682862Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.683409Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.687011Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:50.748015Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.748129Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.748731Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.752627Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:50.813405Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.877612Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.877706Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.878131Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.878512Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.882382Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:03:50.884359Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:03:50.913052Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.916663Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.281469Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.281985Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.285157Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:03:51.297992Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.298421Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.301939Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:03:51.314931Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.330942Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.331340Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.335056Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:03:51.335422Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.367470Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.632000Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.632470Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.635836Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:03:51.696822Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.697072Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.697214Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.697650Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.698123Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.704502Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:51.706786Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:51.707282Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:51.762958Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.763035Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.763063Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.763309Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.763639Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.766794Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:51.768385Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:51.796189Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.796260Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.796460Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.799338Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:51.828763Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:53.847429Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:58.725369Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:58.725369Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] 
[2026-06-04T17:03:58.725369Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:58.725449Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] 
[2026-06-04T17:03:58.725458Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:58.725466Z] [nf-f5c3ba34030eff20979d504bb11eb896-9d99f-55qpj] [612_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec