Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8bd0c230e524b7e1388b18e755b8fa/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/11f9d44d4404ac4d1d14b6fb41d404/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/11f9d44d4404ac4d1d14b6fb41d404/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-e573s494 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:09:32,724 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:09:33,538 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:09:33,695 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:09:34,563 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:09:34,712 - cnv_pipe.batch.run_model - INFO - Processing cluster 1356 with 200 probes
2026-06-04 17:09:35,086 - cnv_pipe.batch.run_model.cluster1356 - INFO - Child process started for cluster 1356 with 200 probes
2026-06-04 17:10:30,428 - cnv_pipe.batch.run_model.cluster1356 - INFO - Child process finished cluster 1356. Wrote cluster_1356_samples.csv and cluster_1356_params.csv
2026-06-04 17:10:30,429 - cnv_pipe.batch.run_model - INFO - Cluster 1356 finished in 55.72 seconds. Status: SUCCESS