File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/ed77c6c328b30b4cf51339fb653d70/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLWizqJ/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLWizqJ/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXLWizqJ/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:03:37.884306Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:37.884985Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:37.885009Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:37.885015Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:37.885019Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXLWizqJ'
[2026-06-04T17:03:37.885023Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:37.885028Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:37.885032Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:37.885036Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:03:37.885040Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:37.885043Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:37.885047Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:37.885050Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:37.885054Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:37.885520Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:37.885634Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:37.891456Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:37.892119Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:37.892332Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:37.892501Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:37.892751Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893155Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893246Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893317Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893434Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893504Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893622Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893685Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.893817Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.894024Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.894380Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.894593Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.895054Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.895618Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.896985Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.897557Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:37.897741Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.898114Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.898578Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.898740Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.898939Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899040Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899179Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899250Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899360Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899425Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899542Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899607Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899719Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.899828Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900163Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900415Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900527Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900589Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900700Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900765Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900882Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.900944Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.901053Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.901113Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.901258Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.901373Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.901631Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.902007Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.902626Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.902691Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.902808Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.902872Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.903223Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.903578Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.903691Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.903760Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.903866Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.903930Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904042Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904103Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904213Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904280Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904387Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904450Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904557Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904672Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904940Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.905414Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.905999Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.906068Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.921521Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.921945Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.922165Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.922233Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.923115Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.923185Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.923359Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.923462Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.923531Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.924932Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.925255Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.925812Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.926076Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.926337Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:37.927263Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.927867Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.928897Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.932002Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.932625Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:37.933401Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.935343Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:37.939465Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:37.944671Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:37.946619Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:37.950417Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:37.951399Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:38.009620Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:38.011666Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.012390Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.015584Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:38.828361Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.829549Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.832432Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:38.993858Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.994934Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.997782Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:39.059146Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.060219Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.063309Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:39.224653Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.225625Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.228437Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:39.490190Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.491006Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.493890Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:39.523416Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.524158Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.527123Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:39.556190Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556939Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.559445Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:39.589082Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.589824Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.592344Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:39.621812Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.622524Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.625109Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:39.654638Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.654713Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.655431Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.655662Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.658403Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:39.659455Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:39.672926Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.673572Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.675998Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:39.689447Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.689501Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.690068Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.690432Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.693387Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:39.754998Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.755675Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.758104Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:39.870092Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.870779Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.873140Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:39.903664Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.904283Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.906691Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:39.936587Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.937267Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.939780Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:40.352268Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.353021Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.356081Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:40.417659Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.418337Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.421067Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:40.532654Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.533391Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.536418Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:40.597822Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.598490Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.601286Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:40.602117Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.602601Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.605178Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:40.618609Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.619238Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.621862Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:40.635122Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.635196Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.635771Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.636137Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.639444Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:40.640247Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:40.668438Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.668507Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.669129Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.669592Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.672331Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:40.673296Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.673650Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:40.674035Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.676211Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:40.705791Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.705869Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.705901Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.706407Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.706841Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.707137Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.712505Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:40.713065Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:41.424165Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.424817Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.427583Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:41.789872Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.790442Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.793209Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:41.822354Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.822929Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.825498Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:41.854762Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.855360Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.857838Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:41.887431Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.888011Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.891262Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:41.952124Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.952809Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.955742Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:42.017165Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.017734Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.020402Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:42.049556Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.050085Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.052613Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:42.057139Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:42.057761Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.058265Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.060664Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:42.090232Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.090295Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.090318Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.090744Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.091296Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.091473Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.094908Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:42.096068Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:42.096753Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:42.156518Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.156593Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.157067Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.157373Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.160433Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:42.160987Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:42.221922Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.221997Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.222474Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.222807Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.225525Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:42.226630Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:42.287227Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.287309Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.287774Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.288085Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.291155Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:42.318641Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:42.320418Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.320475Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.321919Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.322257Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.324682Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:42.386147Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.713384Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:42.750911Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.750983Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.751410Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.752086Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.755126Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:42.755847Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:42.784336Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.784403Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.948667Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.949138Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.951558Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:42.980959Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.095200Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.095632Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.098128Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:43.127532Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.044062Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.044511Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.047026Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:44.076458Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.076711Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.076838Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.077097Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.077550Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.080685Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:44.081833Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:44.082822Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:44.110408Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.110463Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.110484Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.110674Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.110951Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.112962Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:44.113413Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:44.142968Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.143027Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.143210Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.145555Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:44.175473Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.498801Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:56.773184Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:56.773184Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] 
[2026-06-04T17:03:56.773184Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:56.773244Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] 
[2026-06-04T17:03:56.773254Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:56.773262Z] [nf-05ed77c6c328b30b4cf51339fb653d70-b398b-g5n9l] [580_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec