File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/c2c9003663b6149a057d416da1d6dc/.command.log
Size
69.9 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/c2c9003663b6149a057d416da1d6dc/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/c2c9003663b6149a057d416da1d6dc/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:38.592230Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:38.593062Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:38.593073Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:38.593077Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:38.593081Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXIGtQTW'
[2026-06-04T17:03:38.593085Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:38.593090Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:38.593094Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:38.593097Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:03:38.593101Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:38.593104Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:38.593108Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:38.593112Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:38.593115Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:38.594006Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:38.594072Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:38.599788Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:38.600439Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:38.600729Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:38.601110Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:38.601239Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602002Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602107Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602180Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602305Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602372Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602642Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602888Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.603076Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.603196Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.603309Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.603678Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.604989Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.605616Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:38.605694Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.605773Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.605891Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.605958Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.606079Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.606148Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.606270Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.606412Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.606901Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607008Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607131Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607197Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607322Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607389Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607505Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607576Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607692Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607783Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607900Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.607964Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.608105Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.608306Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.608729Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.608798Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.608911Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.608978Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609093Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609157Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609269Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609337Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609447Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609511Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609625Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609696Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.609958Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610391Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610501Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610566Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610672Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610732Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610837Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.610898Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611005Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611066Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611170Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611232Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611339Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611402Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.611605Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612083Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612191Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612260Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612391Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612453Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612563Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612629Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612737Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612799Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612905Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.612969Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.627033Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.627619Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.627700Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.627863Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.627933Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.628018Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.628083Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.628192Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.628260Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.628304Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:38.632344Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.632951Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.633230Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.634885Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.635443Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:38.635935Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.636544Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.638876Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.639679Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:38.642104Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.642695Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:38.644443Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.645722Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:38.648855Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:38.651005Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:38.652768Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:38.654449Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:38.761940Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.763012Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.767345Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:39.528859Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.530144Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.533293Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:39.594188Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.595637Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.598312Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:39.627457Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.628669Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.631163Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:39.660510Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.661574Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.663934Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:39.693400Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.694566Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.697756Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:39.908863Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.909710Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.912562Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:40.024381Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.025157Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.026044Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.028396Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.029039Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:40.030772Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:40.060345Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.061146Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.063120Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.064038Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.064228Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:40.067740Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:40.128956Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.129745Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.132756Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:40.544732Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.544814Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.545593Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.547537Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.549616Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:40.550535Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:40.580132Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.580926Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.584041Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:40.612762Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.612842Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.613680Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.614287Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.618126Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:40.619187Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:40.648414Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.649266Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.652003Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:40.681464Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.682279Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.685061Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:40.714151Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.714916Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.717482Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:40.747187Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.747974Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.750732Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:40.780545Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.781319Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.784284Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:40.785209Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.785873Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.788664Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:40.900250Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.900333Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.901039Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.901341Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.904876Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:40.906335Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:40.965637Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.966374Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.969742Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:40.974265Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.974930Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.977545Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:41.040227Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.040322Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.040993Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.041573Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.044595Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:41.045608Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:41.073789Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.074514Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.077333Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:41.078347Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.078984Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.081928Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:41.143434Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.144136Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.147347Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:41.176804Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.177494Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.180336Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:41.209622Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.210677Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.212404Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.213055Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.213777Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:41.216233Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:41.277801Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.278498Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.281756Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:41.543465Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.544052Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.547510Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:41.552298Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.552900Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.555686Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:41.585093Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.585682Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.588807Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:41.617950Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.618608Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.621794Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:41.651010Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.651638Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.654368Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:41.715851Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.716476Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.719166Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:41.780719Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.781367Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.784193Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:41.845705Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.846284Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.849779Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:41.961467Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.962165Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.965674Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:42.077213Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.077795Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.080504Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:42.111254Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.111879Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.114561Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:42.144525Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.145135Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.147662Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:42.178183Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.178765Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.182088Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:42.343772Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.344391Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.348635Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:42.379236Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.379821Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.382641Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:42.412918Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.413566Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.416358Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:42.728508Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.728585Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.729118Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.729616Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.732763Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:42.762795Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:42.794633Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.794701Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.795186Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.797301Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.798932Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:42.799870Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:42.829723Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.830293Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.833348Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:42.862497Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.863083Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.865843Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:42.927069Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.392098Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.392594Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.395490Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:43.456769Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.570945Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.571481Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.574347Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:43.635744Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.749997Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.750525Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.753346Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:43.815899Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.930123Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.930603Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.933339Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:43.994798Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.359523Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.359999Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.362991Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:44.424260Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.456460Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.456533Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.456943Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.458620Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.459518Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:44.461517Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:44.522974Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.523027Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.523301Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.523440Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.524015Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.524875Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.527160Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:44.529614Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:44.530811Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:44.558681Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.558762Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.558786Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.558991Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.559481Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.562511Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:44.563689Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:44.592891Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.592966Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.593199Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.596107Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:44.625666Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.197913Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:57.482989Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:57.482989Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] 
[2026-06-04T17:03:57.482989Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:57.483047Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] 
[2026-06-04T17:03:57.483059Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:57.483066Z] [nf-9bc2c9003663b6149a057d416da1d6dc-109c5-wd2x5] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec