File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/1cc9035c332f645861faf0365f22b8/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/1cc9035c332f645861faf0365f22b8/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/1cc9035c332f645861faf0365f22b8/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX12aOqu/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX12aOqu/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX12aOqu/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:03:37.090563Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:37.097026Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:37.097043Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:37.097050Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:37.097057Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX12aOqu'
[2026-06-04T17:03:37.097062Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:37.097069Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:37.097075Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:37.097080Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-04T17:03:37.097085Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:37.097090Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:37.097096Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:37.097101Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:37.097107Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:37.097667Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:37.097780Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:37.104662Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:37.105307Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:37.105468Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:37.105615Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:37.105858Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106245Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106353Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106445Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106599Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106686Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106832Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.106911Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.107096Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.107257Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.107648Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.107772Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.107942Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.108083Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.108232Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.108655Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.108994Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.109249Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.109368Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.110672Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.111164Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.111703Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:37.111781Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.111915Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112332Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112410Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112558Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112639Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112776Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112858Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.112994Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.113110Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.113316Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.113429Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.113910Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.113992Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114129Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114208Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114348Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114424Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114559Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114636Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.114771Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.115054Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.116078Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.116156Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.116294Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.116374Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.116925Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117308Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117462Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117545Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117687Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117779Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117924Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.117999Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.118136Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.118218Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.118352Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.118476Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.119123Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.119198Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.119334Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.119411Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.119543Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.119627Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.137825Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.138271Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.138516Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.139305Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.139466Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.139878Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.140017Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.140193Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.140430Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.142041Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.142386Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.142621Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.142988Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.143900Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.144113Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.144445Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.144853Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.145610Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:37.145898Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.149747Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:37.153751Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:37.156031Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:37.156521Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:37.158968Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:37.163351Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:37.165004Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:37.165898Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:37.273326Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.273392Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.274149Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.274533Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.279040Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:37.280403Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:38.090994Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.091892Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.094582Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:38.255833Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.256590Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.260167Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:38.421148Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.422041Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.425224Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:38.486247Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.486319Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.487170Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.487429Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.490335Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:38.491462Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:38.519356Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.520026Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.522323Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:38.551699Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.552466Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.554577Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:38.616157Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.616843Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.619659Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:38.680743Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.681545Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.684315Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:38.713328Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.713377Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.714034Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.714337Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.717699Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:38.718796Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:38.746443Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.747221Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.750246Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:38.811197Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.811888Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.814561Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:38.843693Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.844403Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.846853Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:38.908090Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.908747Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.911760Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:38.972813Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973500Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.976280Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:39.037338Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.038039Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.040851Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:39.102020Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.102808Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.105475Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:39.166796Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.168071Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.170886Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:39.200061Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.200866Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.204033Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:39.966608Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.966707Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.967448Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.967789Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.971078Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:39.971831Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:40.031904Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.031990Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.032749Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.033083Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.036336Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:40.037356Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:40.097316Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.098114Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.101113Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:40.362676Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.363869Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.366846Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:40.428034Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.429245Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.432648Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:40.644073Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.644212Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.645332Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.645820Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.649416Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:40.680563Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:40.710241Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.710353Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.711580Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.711921Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.715635Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:40.717428Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:40.776387Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.776473Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.777129Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.777475Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.780464Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:40.781929Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:40.809501Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.810244Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.813543Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:41.475267Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.475979Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.479104Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:41.508027Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.508691Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.511600Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:41.516593Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.517161Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.519672Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:41.581020Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.581710Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.584268Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:41.645612Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.646254Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.649084Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:41.710200Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.710888Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.713492Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:41.774773Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.775417Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.778635Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:41.989608Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.989687Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.989745Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.990315Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.990709Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.991237Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.994812Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:41.997134Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:42.027347Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:42.056048Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.056118Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.056156Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.056717Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.056947Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.057203Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.060460Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:42.061863Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:42.063196Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:42.121403Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.121924Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.124849Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:42.185914Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.350072Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.350578Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.353509Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:42.382649Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.596962Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.597671Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.600809Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:42.630060Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.095312Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.095991Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.098947Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:43.160283Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.374891Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.375672Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.378592Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:43.407844Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.572205Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.572679Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.575633Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:43.604674Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.219598Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.220122Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.222938Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:44.251891Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.067051Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.067747Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.070394Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:45.099654Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.099961Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.100128Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.100366Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.100913Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.105107Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:45.106447Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:45.107407Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:45.133023Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.133085Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.133329Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.135541Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:45.136797Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.136996Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.138968Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:45.168581Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.168621Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.168776Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.170720Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:45.200397Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.717668Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:55.984939Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:55.984939Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] 
[2026-06-04T17:03:55.984939Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:55.984988Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] 
[2026-06-04T17:03:55.984995Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:55.985003Z] [nf-471cc9035c332f645861faf0365f22b8-d4432-76b6q] [758_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec