cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119922603, elapsed 0.1s, est remaining 1.0s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 2099
progress 10% @chr2:19982463, elapsed 0.1s, est remaining 1.0s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 1312
progress 15% @chr2:189039272, elapsed 0.2s, est remaining 1.0s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 11711
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 1.0s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 3244
progress 25% @chr4:88278144, elapsed 0.3s, est remaining 0.9s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 13513
progress 30% @chr5:147055665, elapsed 0.3s, est remaining 0.8s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 23549
progress 35% @chr6:127148841, elapsed 0.4s, est remaining 0.7s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 33501
progress 40% @chr7:128806237, elapsed 0.4s, est remaining 0.7s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 42986
progress 45% @chr9:841839, elapsed 0.5s, est remaining 0.6s, peak mem 341MB, user 0.0s, sys 0.0s, output queue size 52369
progress 50% @chr10:32583034, elapsed 0.5s, est remaining 0.5s, peak mem 341MB, user 0.0s, sys 0.1s, output queue size 62292
progress 55% @chr11:48488793, elapsed 0.6s, est remaining 0.5s, peak mem 341MB, user 0.0s, sys 0.1s, output queue size 72760
progress 60% @chr12:22055149, elapsed 0.6s, est remaining 0.4s, peak mem 350MB, user 0.0s, sys 0.1s, output queue size 82305
progress 65% @chr13:49220338, elapsed 0.7s, est remaining 0.4s, peak mem 356MB, user 0.0s, sys 0.1s, output queue size 10700
progress 70% @chr15:42684116, elapsed 0.8s, est remaining 0.3s, peak mem 365MB, user 0.0s, sys 0.1s, output queue size 20744
progress 75% @chr16:30733894, elapsed 0.8s, est remaining 0.3s, peak mem 365MB, user 0.0s, sys 0.1s, output queue size 30302
progress 80% @chr17:42554669, elapsed 0.9s, est remaining 0.2s, peak mem 365MB, user 0.0s, sys 0.1s, output queue size 40997
progress 85% @chr19:5455492, elapsed 0.9s, est remaining 0.2s, peak mem 410MB, user 0.0s, sys 0.1s, output queue size 51407
progress 90% @chr19:55731999, elapsed 1.0s, est remaining 0.1s, peak mem 410MB, user 0.0s, sys 0.1s, output queue size 60901
progress 95% @chr22:36929362, elapsed 1.4s, est remaining 0.1s, peak mem 2474MB, user 5.8s, sys 3.5s, output queue size 3225
progress 100% @chrY:24869219, elapsed 1.4s, est remaining 0.0s, peak mem 2474MB, user 5.9s, sys 3.5s, output queue size 7895
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813904
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.598 user 0.140 sys 2.267 real
done: 1 calls 0.397 user 0.083 sys 0.482 real
execute: 1 calls 0.000 user 0.016 sys 1.421 real
fetch_reads: 208647 calls 0.067 user 0.000 sys 0.178 real
fetch_ref: 2048 calls 0.001 user 0.016 sys 0.033 real
fetch_vcf: 2048 calls 0.723 user 0.066 sys 0.930 real
idle: 92 calls 0.003 user 0.002 sys 31.790 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 4.183 user 3.295 sys 7.741 real
overall: 2594484224 mem 10.499 user 14.735 sys 2.793 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory