File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/65312c3722acf1c30f933193c461b8/.command.err
Size
5.7 KB
Task
DAQ:BAM_POSTDEDUP_QC:SEQTOOL (HCC1395_tumor)
Attempt

Content

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[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
loading BEDs...
[mpileup] 1 samples in 1 input files
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
/opt/conda/lib/python3.9/site-packages/pyranges/__init__.py:8: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pkg_resources
/opt/conda/lib/python3.9/site-packages/pyranges/__init__.py:8: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pkg_resources
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai

0it [00:00, ?it/s]
67it [00:00, 281018.37it/s]
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Homo_sapiens_assembly38.dbsnp138.vcf.gz.tbi
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
done loading BEDs.
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.md.bam.bai