cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:204000001, elapsed 0.1s, est remaining 1.6s, peak mem 813MB, user 0.2s, sys 2.9s, output queue size 153
progress 10% @chr3:117000001, elapsed 0.2s, est remaining 1.6s, peak mem 813MB, user 0.3s, sys 10.3s, output queue size 314
progress 15% @chr4:16000001, elapsed 0.2s, est remaining 1.4s, peak mem 813MB, user 0.6s, sys 29.0s, output queue size 476
progress 20% @chr4:138000001, elapsed 0.3s, est remaining 1.2s, peak mem 813MB, user 0.9s, sys 43.2s, output queue size 637
progress 25% @chr6:21000001, elapsed 0.4s, est remaining 1.1s, peak mem 813MB, user 1.2s, sys 61.1s, output queue size 798
progress 30% @chr7:27000001, elapsed 0.4s, est remaining 1.0s, peak mem 813MB, user 1.6s, sys 73.4s, output queue size 960
progress 35% @chr7:146000001, elapsed 0.5s, est remaining 0.9s, peak mem 813MB, user 2.0s, sys 83.3s, output queue size 1121
progress 40% @chr5:155000001, elapsed 0.5s, est remaining 0.8s, peak mem 813MB, user 2.3s, sys 98.1s, output queue size 1283
progress 45% @chr9:3000001, elapsed 0.6s, est remaining 0.7s, peak mem 813MB, user 2.7s, sys 111.3s, output queue size 1444
progress 50% @chr11:8000001, elapsed 0.6s, est remaining 0.6s, peak mem 813MB, user 3.2s, sys 121.9s, output queue size 1456
progress 55% @chr12:33000001, elapsed 0.7s, est remaining 0.6s, peak mem 813MB, user 3.7s, sys 132.8s, output queue size 1618
progress 60% @chr14:15000001, elapsed 0.7s, est remaining 0.5s, peak mem 813MB, user 4.1s, sys 144.3s, output queue size 1780
progress 65% @chr14:74000001, elapsed 0.8s, est remaining 0.4s, peak mem 813MB, user 4.6s, sys 164.2s, output queue size 1942
progress 70% @chr14:59000001, elapsed 0.9s, est remaining 0.4s, peak mem 813MB, user 5.0s, sys 180.3s, output queue size 2105
progress 75% @chr2:203000001, elapsed 0.9s, est remaining 0.3s, peak mem 813MB, user 5.3s, sys 199.1s, output queue size 2266
progress 80% @chr2:117000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 5.5s, sys 215.2s, output queue size 2427
progress 85% @chr17:36000001, elapsed 1.0s, est remaining 0.2s, peak mem 813MB, user 6.0s, sys 236.0s, output queue size 2588
progress 90% @chrX:132000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 6.6s, sys 254.2s, output queue size 2767
progress 95% @chr4_GL383528v1_alt:1, elapsed 1.2s, est remaining 0.1s, peak mem 813MB, user 7.0s, sys 276.8s, output queue size 3159
progress 100% @HLA-C*07:02:05:1, elapsed 1.3s, est remaining 0.0s, peak mem 813MB, user 7.4s, sys 312.3s, output queue size 6336
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.000 user 0.000 sys 0.011 real
"predict_filter": 187 calls 0.028 user 0.047 sys 0.128 real
advance: 3219322 calls 0.549 user 107.086 sys 112.435 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.007 sys 1.456 real
fetch_ref: 476 calls 0.001 user 0.143 sys 0.600 real
idle: 20633 calls 0.684 user 11.468 sys 766.106 real
init: 1 calls 0.372 user 0.157 sys 0.688 real
overall: 852627456 mem 9.471 user 368.102 sys 3.724 real