Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8bd0c230e524b7e1388b18e755b8fa/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e8bd98d1d36883ff2362f3ac5bbd01/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e8bd98d1d36883ff2362f3ac5bbd01/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rch9jeh8 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:05:37,035 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:05:37,887 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:05:38,059 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:05:38,955 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:05:39,105 - cnv_pipe.batch.run_model - INFO - Processing cluster 105 with 140 probes
2026-06-04 17:05:39,470 - cnv_pipe.batch.run_model.cluster105 - INFO - Child process started for cluster 105 with 140 probes
2026-06-04 17:06:22,209 - cnv_pipe.batch.run_model.cluster105 - INFO - Child process finished cluster 105. Wrote cluster_105_samples.csv and cluster_105_params.csv
2026-06-04 17:06:22,210 - cnv_pipe.batch.run_model - INFO - Cluster 105 finished in 43.10 seconds. Status: SUCCESS