.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/843c7e0f29c66d5ec118a5092add8b/.command.err
Size: 63.3 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt
Content

[2026-06-04T17:03:43.320857Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:43.321644Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:43.321653Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:43.321657Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:43.321661Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqXO253'
[2026-06-04T17:03:43.321665Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:43.321670Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:43.321674Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:43.321677Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:03:43.321681Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:43.321685Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:43.321688Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:43.321692Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:43.321695Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:43.322659Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:43.323019Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:43.329081Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:43.329833Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:43.330008Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:43.330208Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:43.330489Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.330821Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.330917Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.330993Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331113Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331180Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331297Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331359Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331478Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331579Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.331739Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.332105Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.332201Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.332390Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.332468Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.333018Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.333232Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.333701Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335186Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335565Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335641Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335755Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335825Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335936Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.335998Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336105Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336176Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336283Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336347Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336517Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336589Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336710Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336784Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.336900Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:43.337372Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.337451Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.337562Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.337741Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.338254Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.338378Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.338809Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.338873Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.338983Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339046Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339487Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339549Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339663Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339783Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.339939Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.340244Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.340609Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.340676Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.340781Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.340844Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.340952Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341012Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341123Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341186Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341294Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341360Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341467Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341528Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341662Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.341752Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.342146Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.342553Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.342663Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.342724Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.356125Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.356706Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.356780Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.356941Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.357007Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.357094Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.358422Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.359145Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.359236Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.359290Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:43.362478Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.363086Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.363420Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.363838Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.364256Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.366071Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.366571Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:43.366884Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.367285Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.368465Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.370660Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:43.373044Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:43.376818Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:43.378952Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:43.381877Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:43.486370Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.487209Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.490913Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:44.102907Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.103740Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.106947Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:45.073349Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:45.120947Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.121045Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.121076Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.121997Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.123151Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.123704Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.127534Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:45.128477Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:45.131269Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:45.242365Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.243246Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.246684Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:45.458459Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.459443Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.462967Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:45.582775Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:45.624312Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.624426Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.625249Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.625742Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.629271Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:45.630615Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:45.692076Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.692166Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.692933Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.694838Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.696838Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:45.698232Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:45.759797Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.760692Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.763900Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:45.793197Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.794027Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.796668Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:45.827107Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.827926Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.830900Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:45.860416Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.861313Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.864066Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:46.227820Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.228615Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.231889Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:46.292927Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.293645Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.296650Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:46.358353Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.359109Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.362349Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:46.423540Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.424347Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.427729Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:46.539172Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.539968Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.543103Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:46.704624Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.705405Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.708454Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:46.970833Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.971702Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.975078Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:47.086271Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.087039Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.090353Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:47.151916Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.153036Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.156713Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:47.217451Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.218197Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.221859Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:47.282692Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.282783Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.283498Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.285367Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.287734Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:47.288509Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:47.349905Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.349999Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.350641Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.351025Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.355152Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:47.356093Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:47.415391Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.416116Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.418928Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:47.480238Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.480333Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.480972Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.481281Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.485136Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:47.486381Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:47.515879Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.515982Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.516603Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.518503Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.520332Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:47.521501Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:47.583232Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.583353Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.583421Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.584364Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.584791Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.585226Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.588970Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:47.591014Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:47.592274Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:47.652104Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.652178Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.652757Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.655266Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.655893Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:47.656328Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.658450Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.658859Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:47.661446Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:47.690571Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.691310Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.693745Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.694437Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.695056Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:47.697653Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:48.510657Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.511268Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.514243Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:48.575608Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.576262Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.579675Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:48.640501Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.641126Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.644551Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:48.906432Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.907021Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.910362Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:48.972399Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.972923Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.975685Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:49.037319Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.037886Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.040949Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:49.102132Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.102219Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.102721Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.104739Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.105507Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:49.107694Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:49.169584Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.170189Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.173697Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:49.235132Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.235226Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.235711Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.236468Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.239545Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:49.240431Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:49.254129Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.254645Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.257739Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:49.270874Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.270965Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.286900Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.401050Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.401557Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.404610Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:49.465952Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.630324Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.630815Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.633664Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:49.695079Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.959555Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.960022Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.963237Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:50.024708Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.389422Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.389899Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.392700Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:50.422159Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.787280Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.787704Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.790352Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:50.820618Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.820840Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.820957Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.821338Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.821492Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.825789Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:50.825967Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:50.826415Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:50.855926Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.855979Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.856001Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.856175Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.856674Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.859396Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:50.884291Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:50.890031Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.890094Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.890294Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.893274Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:50.922417Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:53.891353Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:04:02.210383Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:04:02.210383Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] 
[2026-06-04T17:04:02.210383Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:04:02.210450Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] 
[2026-06-04T17:04:02.210458Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:04:02.210465Z] [nf-cb843c7e0f29c66d5ec118a5092add8b-f2a97-vjknn] [598_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec