cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119917628, elapsed 0.0s, est remaining 0.9s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 3191
progress 10% @chr2:19353141, elapsed 0.1s, est remaining 0.8s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 7731
progress 15% @chr2:189054159, elapsed 0.1s, est remaining 0.7s, peak mem 181MB, user 0.0s, sys 0.0s, output queue size 8879
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 5720
progress 25% @chr4:88467059, elapsed 0.2s, est remaining 0.6s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 15988
progress 30% @chr5:147055665, elapsed 0.2s, est remaining 0.6s, peak mem 210MB, user 0.0s, sys 0.0s, output queue size 3993
progress 35% @chr6:127137390, elapsed 0.3s, est remaining 0.5s, peak mem 210MB, user 0.0s, sys 0.0s, output queue size 13950
progress 40% @chr7:128809450, elapsed 0.3s, est remaining 0.5s, peak mem 219MB, user 0.0s, sys 0.0s, output queue size 23425
progress 45% @chr9:2021946, elapsed 0.3s, est remaining 0.4s, peak mem 337MB, user 0.0s, sys 0.0s, output queue size 32801
progress 50% @chr10:32729332, elapsed 0.4s, est remaining 0.4s, peak mem 408MB, user 0.0s, sys 0.1s, output queue size 42742
progress 55% @chr11:48306223, elapsed 0.4s, est remaining 0.3s, peak mem 444MB, user 0.0s, sys 0.1s, output queue size 53195
progress 60% @chr12:22478313, elapsed 0.4s, est remaining 0.3s, peak mem 448MB, user 0.0s, sys 0.1s, output queue size 8723
progress 65% @chr13:49174435, elapsed 0.5s, est remaining 0.2s, peak mem 471MB, user 0.0s, sys 0.1s, output queue size 19748
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 501MB, user 0.0s, sys 0.1s, output queue size 29775
progress 75% @chr16:30930073, elapsed 0.5s, est remaining 0.2s, peak mem 501MB, user 0.0s, sys 0.1s, output queue size 39338
progress 80% @chr17:42307402, elapsed 0.6s, est remaining 0.1s, peak mem 501MB, user 0.0s, sys 0.1s, output queue size 50032
progress 85% @chr19:5686900, elapsed 0.6s, est remaining 0.1s, peak mem 501MB, user 0.0s, sys 0.1s, output queue size 60444
progress 90% @chr19:55688870, elapsed 0.6s, est remaining 0.1s, peak mem 510MB, user 0.0s, sys 0.1s, output queue size 69945
progress 95% @chr22:37089578, elapsed 1.1s, est remaining 0.1s, peak mem 2520MB, user 9.8s, sys 1.5s, output queue size 3247
progress 100% @chr6_GL000254v2_alt:3878686, elapsed 1.1s, est remaining 0.0s, peak mem 2520MB, user 10.0s, sys 1.5s, output queue size 6988
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047063
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.379 user 0.087 sys 2.584 real
done: 1 calls 0.329 user 0.070 sys 0.405 real
execute: 1 calls 0.007 user 0.001 sys 1.129 real
fetch_reads: 208647 calls 0.095 user 0.000 sys 0.178 real
fetch_ref: 2079 calls 0.014 user 0.009 sys 0.016 real
fetch_vcf: 2079 calls 1.307 user 0.009 sys 1.184 real
idle: 91 calls 0.002 user 0.000 sys 31.776 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 7.437 user 1.384 sys 9.760 real
overall: 2642771968 mem 14.406 user 3.061 sys 2.573 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory