Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/0ff0d393a8cccefa679cde01fb52c4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/0ff0d393a8cccefa679cde01fb52c4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/8eee459d74eba64dfe5bc8368d5cb4/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/8eee459d74eba64dfe5bc8368d5cb4/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:43.986080Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:43.987497Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:43.987525Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:43.987531Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:43.987535Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXNGLHy2'
[2026-06-04T17:03:43.987539Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:43.987544Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:43.987547Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:43.987551Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-04T17:03:43.987554Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:43.987558Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:43.987561Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:43.987564Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:43.987568Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:43.988466Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:43.988526Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:43.994648Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:43.995318Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:43.995600Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:43.995877Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.996505Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:43.996839Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.996955Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.997213Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.997492Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.997604Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.997844Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.998546Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.998710Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.998914Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:43.999000Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.000962Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001351Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:44.001464Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001711Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001777Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001891Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.001954Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002064Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002126Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002324Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002398Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002513Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002581Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.002799Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003091Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003512Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003576Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003684Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003748Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003856Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.003920Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004065Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004127Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004415Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004684Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004794Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004858Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.004965Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005026Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005134Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005192Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005301Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005366Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005470Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005535Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.005740Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.006226Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.006895Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007012Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007147Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007221Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007342Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007407Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007536Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.007777Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008325Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008397Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008510Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008576Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008690Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008757Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008871Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.008992Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.023994Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.024161Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.024270Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.024512Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.025070Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.025597Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.025664Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.025770Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.025839Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:44.025884Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:44.029001Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.029511Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.030930Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.031338Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.031959Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.032555Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033038Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.033548Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.034961Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.040077Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:03:44.044679Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:03:44.047195Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:03:44.049401Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:44.051818Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:44.056491Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:03:44.056974Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:44.059983Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:03:44.155192Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.155305Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.156068Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.156736Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.160840Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:03:44.162484Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:03:44.166063Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.166756Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.169843Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:44.582599Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.583419Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.587102Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:03:44.848669Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.849504Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.853210Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:03:45.014243Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.014975Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.018527Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:45.079500Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.080252Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.083616Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:03:45.112627Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.113402Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.116413Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:03:45.116582Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.117186Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.120165Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:03:45.149416Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.150192Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.153052Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:45.214395Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.215192Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.218167Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:45.279302Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.279424Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.280132Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.280622Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.284231Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:03:45.285236Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:45.314565Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.315243Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.318071Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.318814Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:45.319206Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.322389Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:45.323100Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.323621Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.326534Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:03:45.355798Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.356503Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.359570Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:45.388429Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.388505Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.389152Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.389738Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.392781Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:45.393790Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:03:45.423545Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.424382Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.426402Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.427105Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.428866Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:03:45.430056Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:45.443646Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.444251Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.447260Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:03:45.476541Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.477225Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.480653Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:03:45.842837Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.842925Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.843543Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.844228Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.847541Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:03:45.848612Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:03:45.909989Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.910678Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.913949Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:03:45.975531Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.976202Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.979019Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:03:46.008373Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.009026Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.011889Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:03:46.040941Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.041573Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.045050Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:03:46.045540Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.046027Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.048539Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:46.110428Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.111099Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.114584Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:03:46.426497Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.427141Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.430255Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:03:46.459447Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.460044Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.462933Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:03:46.468110Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.468621Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.471679Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:46.501020Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.501602Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.510049Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:46.539198Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.539771Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.542985Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:46.556073Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.556604Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.559367Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:03:46.588483Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.589067Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.592414Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:03:46.653519Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.654116Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.657493Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:46.718600Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.719168Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.722157Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:46.783371Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.783909Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.786908Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:03:46.788249Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.788620Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.791346Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:03:46.820456Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.820532Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.821000Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.821319Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.824831Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:03:46.825784Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:46.826769Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.827239Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.829771Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:03:46.859529Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.859631Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.860077Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.860360Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.863664Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:03:46.864497Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:46.868018Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.868448Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.871772Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:46.900567Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.900643Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.901062Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.903255Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.904200Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:47.068061Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.068546Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.071629Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:03:47.133114Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.247410Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.247487Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.247520Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.247930Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.248211Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.248874Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.252414Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:03:47.253774Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:47.254831Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:03:47.284236Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.285704Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.301426Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.415521Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.416007Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.419762Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:03:47.481044Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.146767Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.147258Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.150143Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:48.211336Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.211607Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.211764Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.212089Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.213203Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.217364Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:48.219429Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:48.220588Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:48.250300Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.250386Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.250411Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.250651Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.251446Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.255279Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:48.256216Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:48.284188Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.284245Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.284435Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.287194Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:48.316639Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.633785Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:54.557435Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:54.557435Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] 
[2026-06-04T17:03:54.557435Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:54.557504Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] 
[2026-06-04T17:03:54.557511Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:54.557516Z] [nf-060ff0d393a8cccefa679cde01fb52c4-5d8f0-kzg7f] [597_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec