File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/96e5cfc50cb090dad004d3e27d871f/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-04T17:03:39.516321Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:39.518011Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:39.518037Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:39.518043Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:39.518048Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXcz5ZvP'
[2026-06-04T17:03:39.518052Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:39.518057Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:39.518061Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:39.518064Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:03:39.518068Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:39.518072Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:39.518076Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:39.518079Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:39.518083Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:39.518756Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:39.518944Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:39.525117Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:39.526039Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:39.526713Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:39.527146Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:39.527487Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.528234Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.528333Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.528406Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.528751Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.529095Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.529325Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.529624Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.529817Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.530714Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.530972Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.531302Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.533379Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.533848Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.533927Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.534129Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:39.534330Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.534414Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.534596Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.534660Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.535060Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.535265Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.535385Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.535454Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.535566Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.535632Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.536042Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.536107Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.536218Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.536323Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.536604Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537128Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537263Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537329Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537444Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537509Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537621Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537689Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537840Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.537908Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.538022Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.538086Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.538293Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.538728Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.538849Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.538916Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539035Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539100Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539268Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539335Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539446Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539510Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539622Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539683Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539794Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.539859Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.540165Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.540765Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.540882Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.540946Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.541084Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.541147Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.541259Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.541326Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.555929Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556095Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556167Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556329Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556403Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556496Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556563Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556672Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556740Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:39.556792Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:39.560070Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.560641Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.562610Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.563168Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.564035Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.565298Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.566386Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.567441Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.570620Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.571816Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:03:39.576513Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:03:39.580248Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:39.584524Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:03:39.588387Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:03:39.592278Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:03:39.593820Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:03:39.594047Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:03:39.690811Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.691679Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.697180Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:03:40.008764Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.008875Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.009713Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.010170Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.014523Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:40.015610Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:40.075883Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.075980Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.076692Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.077139Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.081654Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:03:40.082836Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:03:40.142469Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.142584Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.143279Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.143732Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.147942Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:03:40.149390Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:03:40.208847Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.209675Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.212606Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:40.274471Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.274563Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.275219Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.277119Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.278673Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:03:40.281311Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:40.342265Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.343067Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.346297Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:40.407654Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.408374Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.411967Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:03:40.440843Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.441609Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.445244Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:03:40.606333Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.607007Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.610252Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:03:40.639277Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.639946Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.643379Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:03:40.804985Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.805090Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.805768Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.806205Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.809846Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:03:40.810798Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:40.839768Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.840528Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.841341Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.843754Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.844535Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:03:40.847619Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:40.876748Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.877389Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.880471Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:03:40.909380Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.909452Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.909997Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.910455Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.913758Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:40.915010Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:40.974833Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.974898Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.975417Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.976244Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.979127Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:40.982101Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:03:41.011314Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.011943Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.015493Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:41.076337Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.076992Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.079813Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:41.109186Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.109759Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.112633Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:41.174134Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.174227Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.174876Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.175374Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.178987Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:03:41.180285Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:03:41.240125Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.240821Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.244232Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:41.305380Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.305448Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.305970Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.306297Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.310205Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:03:41.311553Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:41.372590Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.372688Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.373255Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.373611Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.377027Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:03:41.378174Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:03:41.438060Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.438644Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.441327Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:03:41.502837Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.503404Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.507521Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:41.568594Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.568691Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.569279Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.569868Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.573671Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:41.574933Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:41.634908Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.634991Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.635033Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.635537Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.636071Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.636609Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.641492Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:03:41.643600Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:41.645157Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:03:41.701889Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.702213Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.702731Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.703218Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.708533Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:03:41.709870Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:03:41.738707Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.739244Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.742737Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:03:41.743559Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.743990Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.746651Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:03:41.775995Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.776474Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.779921Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:41.781063Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.781582Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.784897Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:03:41.789758Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.790268Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.792991Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:03:41.822309Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.822406Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.822951Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.826510Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:41.831456Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.831879Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.835059Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:41.864156Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.865689Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.979687Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.980182Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.983353Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:03:42.044606Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.510161Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.510685Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.513918Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:42.543015Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.757708Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.758181Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.761596Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:03:42.822767Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.237814Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.238328Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.241205Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:43.270333Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.434644Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.435078Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.438201Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:03:43.467236Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.467479Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.467617Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.468161Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.468725Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.473396Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:43.475160Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:43.476293Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:43.501969Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.502530Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.502911Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.503138Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.506967Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:43.507366Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.508046Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:43.539074Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.539143Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.539327Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.542007Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:43.571174Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.188606Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:50.065308Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:50.065308Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] 
[2026-06-04T17:03:50.065308Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:50.065393Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] 
[2026-06-04T17:03:50.065404Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:50.065413Z] [nf-f096e5cfc50cb090dad004d3e27d871f-dde73-74rrp] [602_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec