File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/305c843d359f186f84176cb07921f7/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-04T17:03:34.344184Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:34.344989Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:34.345010Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:34.345016Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:34.345021Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAsoDve'
[2026-06-04T17:03:34.345025Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:34.345031Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:34.345034Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:34.345038Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:03:34.345042Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:34.345046Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:34.345049Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:34.345053Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:34.345057Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:34.345669Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:34.345729Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:34.351763Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:34.352511Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:34.352646Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:34.352765Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:34.352979Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.353678Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.353778Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.353886Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.354019Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.354325Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.354414Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.354649Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.354952Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.355220Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.355616Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.357821Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.357886Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:34.358279Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.358608Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.358684Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.358811Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.358882Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359002Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359068Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359264Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359338Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359465Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359540Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.359774Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360157Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360451Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360520Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360635Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360704Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360824Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.360898Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361013Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361077Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361195Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361266Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361383Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361519Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.361945Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362028Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362148Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362216Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362333Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362405Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362520Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362587Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362710Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362833Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.362966Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.363112Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.363627Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.363701Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.363818Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.363885Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364002Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364065Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364181Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364247Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364360Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364427Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364546Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.364636Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365220Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365310Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365447Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365550Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365676Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365746Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365870Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.365939Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.366045Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.366109Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.366481Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.366916Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.382703Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.382878Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.382958Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383134Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383204Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383295Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383360Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383470Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383541Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:34.383632Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:34.383813Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.384624Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.384955Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.385504Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.386160Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.387087Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.387640Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.388884Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.391689Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.396307Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:34.399197Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:34.404558Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:34.405990Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:34.409421Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:34.411584Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:34.413964Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:34.511771Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.511854Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.512950Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.513520Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.517051Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:34.518138Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:34.578294Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.579172Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.582201Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:35.647169Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.648593Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.652276Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:35.681121Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.682374Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.685124Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:35.690327Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.691575Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.694228Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:03:35.723539Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.723611Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.723647Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.724785Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.725162Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.725489Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.729755Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:03:35.731205Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:35.732544Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:35.758567Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.759715Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.762439Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:35.775585Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.776839Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.780450Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:35.781068Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.782011Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.785197Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:35.846495Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.847371Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.850405Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:35.961877Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.962745Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.965962Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:36.127440Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.128268Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.131639Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:36.233614Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:36.243293Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.244057Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.247155Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:36.609517Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.610339Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.613228Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:36.674553Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.674646Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.675430Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.675947Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.679193Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:03:36.680444Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:36.740781Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.741601Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.744924Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:36.856417Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.857254Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.859951Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:03:36.890596Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.891373Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.894450Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:36.955872Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.956615Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.959712Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:37.371474Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.371557Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.372241Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.372805Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.376102Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:37.377043Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:03:37.406436Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.406542Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.407232Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.407815Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.410506Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:03:37.411576Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:37.473404Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.473509Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.474203Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.474468Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.477591Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:03:37.478522Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:37.506883Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.507627Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.510447Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:03:37.539731Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.539814Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.540484Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.541243Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.544048Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:37.544946Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:37.574905Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.575689Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.579132Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:37.608417Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.609124Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.611957Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:03:37.674720Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.675478Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.678352Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:03:37.708687Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.709373Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.711712Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:37.742174Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.742882Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.745720Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:37.907548Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.908255Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.911646Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:38.072908Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.073012Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.073040Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.073676Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.074161Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.074903Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.077188Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:38.079948Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:03:38.080939Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:38.140971Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.141040Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.141073Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.141641Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.142110Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.142708Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.147972Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:38.148445Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:38.149298Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:38.176621Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.177502Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.180826Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:38.442117Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.442984Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.446161Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:38.475046Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.476011Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.478630Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:38.840617Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.841573Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.844716Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:03:38.873603Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.874399Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.877024Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:03:38.938397Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.939197Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.942528Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:38.943282Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.944051Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.946536Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:03:38.975911Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.976838Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.980170Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:03:39.040841Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.041676Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.044887Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:39.105860Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.105967Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.106875Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.107315Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.110744Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:03:39.111649Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:03:39.171686Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.171812Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.172539Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.172970Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.176565Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:39.177802Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:39.237394Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.237965Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.240983Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:39.270156Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.270700Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.272897Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.273807Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:03:39.304948Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.619645Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.620159Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.623041Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:03:39.684446Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.848617Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.848686Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.849116Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.850957Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.851585Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:03:39.853925Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:03:39.883005Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.884639Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.249067Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.249572Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.253051Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:03:40.314054Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.377971Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.378423Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.380974Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:03:40.410517Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.524601Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.525080Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.527559Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:03:40.558314Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.558578Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.558700Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.559237Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.559791Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.562688Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:40.563230Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:40.565171Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:40.594556Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.594628Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.594656Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.594858Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.595185Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.597515Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:40.598429Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:40.628433Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.635834Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.636006Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.638141Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:40.667988Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.939586Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:53.233694Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:53.233694Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] 
[2026-06-04T17:03:53.233694Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:53.233763Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] 
[2026-06-04T17:03:53.233775Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:53.233783Z] [nf-86305c843d359f186f84176cb07921f7-ec4a3-c2dgx] [594_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec