Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/4e96c8e1c888593741ef2c533b208e/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/2f237f075d79a2257e2704410ac590/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/2f237f075d79a2257e2704410ac590/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/4e96c8e1c888593741ef2c533b208e/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0bdb1f3665712132075b19a1a24f1d/germline_control_1.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/0bdb1f3665712132075b19a1a24f1d/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.4qdZC2
Merging 1 temporary files
Done
Cleaning