cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.9s, peak mem 72MB, user 0.1s, sys 0.1s, output queue size 2234
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.8s, peak mem 75MB, user 0.1s, sys 0.2s, output queue size 2012
progress 15% @chr15:63912108, elapsed 0.1s, est remaining 0.8s, peak mem 90MB, user 0.1s, sys 0.4s, output queue size 4637
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.7s, peak mem 99MB, user 0.1s, sys 0.6s, output queue size 6923
progress 25% @chr15:101045981, elapsed 0.2s, est remaining 0.6s, peak mem 102MB, user 0.1s, sys 0.7s, output queue size 8609
progress 30% @chr16:23482923, elapsed 0.3s, est remaining 0.6s, peak mem 111MB, user 0.1s, sys 0.9s, output queue size 11085
progress 35% @chr16:66563122, elapsed 0.3s, est remaining 0.6s, peak mem 126MB, user 0.1s, sys 1.1s, output queue size 13690
progress 40% @chr16:89286670, elapsed 0.3s, est remaining 0.5s, peak mem 135MB, user 0.2s, sys 1.2s, output queue size 16166
progress 45% @chr17:10306939, elapsed 0.4s, est remaining 0.5s, peak mem 144MB, user 0.2s, sys 1.4s, output queue size 18780
progress 50% @chr17:36329856, elapsed 0.4s, est remaining 0.4s, peak mem 156MB, user 0.3s, sys 1.6s, output queue size 21376
progress 55% @chr17:45102951, elapsed 0.5s, est remaining 0.4s, peak mem 168MB, user 0.3s, sys 1.8s, output queue size 23617
progress 60% @chr17:68420189, elapsed 0.5s, est remaining 0.4s, peak mem 177MB, user 0.3s, sys 2.0s, output queue size 26149
progress 65% @chr18:5890198, elapsed 0.6s, est remaining 0.3s, peak mem 183MB, user 0.4s, sys 2.2s, output queue size 28869
progress 70% @chr18:62574057, elapsed 0.6s, est remaining 0.3s, peak mem 195MB, user 0.4s, sys 2.4s, output queue size 31246
progress 75% @chr19:6904036, elapsed 0.7s, est remaining 0.2s, peak mem 210MB, user 0.4s, sys 2.6s, output queue size 33636
progress 80% @chr19:15254152, elapsed 0.7s, est remaining 0.2s, peak mem 222MB, user 0.5s, sys 2.7s, output queue size 35894
progress 85% @chr19:36936746, elapsed 0.8s, est remaining 0.1s, peak mem 231MB, user 0.5s, sys 2.9s, output queue size 38208
progress 90% @chr19:46608197, elapsed 0.8s, est remaining 0.1s, peak mem 237MB, user 0.6s, sys 3.0s, output queue size 40386
progress 95% @chr20:36916678, elapsed 0.8s, est remaining 0.0s, peak mem 246MB, user 0.6s, sys 3.2s, output queue size 43016
progress 100% @chr20:63688301, elapsed 0.9s, est remaining 0.0s, peak mem 258MB, user 0.6s, sys 3.4s, output queue size 45455
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692773
output file size: 22307
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.005 sys 0.019 real
advance: 49760 calls 0.000 user 0.005 sys 0.024 real
calc: 97912 calls 0.000 user 0.020 sys 0.019 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.009 sys 1.573 real
fetch: 97912 calls 0.010 user 0.011 sys 0.020 real
fetch_ref: 97912 calls 0.066 user 0.049 sys 0.345 real
idle: 39 calls 0.004 user 0.020 sys 20.671 real
init: 1 calls 0.040 user 0.010 sys 0.044 real
region: 97912 calls 0.008 user 0.003 sys 0.022 real
tracker: 97912 calls 0.029 user 0.008 sys 0.092 real
overall: 273813504 mem 1.224 user 5.912 sys 2.690 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory