cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:95000001, elapsed 0.0s, est remaining 0.9s, peak mem 420MB, user 0.2s, sys 1.9s, output queue size 135
progress 10% @chr2:184000001, elapsed 0.1s, est remaining 0.6s, peak mem 420MB, user 0.4s, sys 4.8s, output queue size 296
progress 15% @chr2:106000001, elapsed 0.1s, est remaining 0.5s, peak mem 420MB, user 0.6s, sys 7.4s, output queue size 458
progress 20% @chr3:153000001, elapsed 0.1s, est remaining 0.5s, peak mem 420MB, user 0.8s, sys 11.2s, output queue size 620
progress 25% @chr3:78000001, elapsed 0.2s, est remaining 0.5s, peak mem 420MB, user 1.0s, sys 16.3s, output queue size 250
progress 30% @chr5:83000001, elapsed 0.2s, est remaining 0.4s, peak mem 420MB, user 1.1s, sys 21.2s, output queue size 411
progress 35% @chr5:181000001, elapsed 0.2s, est remaining 0.4s, peak mem 420MB, user 1.3s, sys 24.0s, output queue size 572
progress 40% @chr7:137000001, elapsed 0.2s, est remaining 0.4s, peak mem 420MB, user 1.4s, sys 27.4s, output queue size 733
progress 45% @chr9:1, elapsed 0.3s, est remaining 0.3s, peak mem 420MB, user 1.5s, sys 30.9s, output queue size 895
progress 50% @chr10:44000001, elapsed 0.3s, est remaining 0.3s, peak mem 420MB, user 1.6s, sys 34.0s, output queue size 1057
progress 55% @chr11:24000001, elapsed 0.3s, est remaining 0.3s, peak mem 420MB, user 1.8s, sys 36.1s, output queue size 1218
progress 60% @chr10:127000001, elapsed 0.4s, est remaining 0.2s, peak mem 420MB, user 1.9s, sys 37.9s, output queue size 1379
progress 65% @chr13:72000001, elapsed 0.4s, est remaining 0.2s, peak mem 420MB, user 2.0s, sys 40.4s, output queue size 1540
progress 70% @chr15:67000001, elapsed 0.4s, est remaining 0.2s, peak mem 420MB, user 2.2s, sys 43.3s, output queue size 1704
progress 75% @chr14:63000001, elapsed 0.4s, est remaining 0.1s, peak mem 420MB, user 2.4s, sys 46.6s, output queue size 1865
progress 80% @chr19:55000001, elapsed 0.5s, est remaining 0.1s, peak mem 420MB, user 2.5s, sys 49.9s, output queue size 2028
progress 85% @chr21:27000001, elapsed 0.5s, est remaining 0.1s, peak mem 420MB, user 2.7s, sys 52.3s, output queue size 2189
progress 90% @chr20:56000001, elapsed 0.5s, est remaining 0.1s, peak mem 420MB, user 2.9s, sys 55.1s, output queue size 2351
progress 95% @chr16_KI270854v1_alt:1, elapsed 0.6s, est remaining 0.0s, peak mem 420MB, user 3.1s, sys 58.7s, output queue size 2711
progress 100% @HLA-DRB1*14:54:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 3.2s, sys 63.8s, output queue size 5937
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000c06f2
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.002 user 0.001 sys 0.009 real
"predict_filter": 136 calls 0.004 user 0.000 sys 0.018 real
advance: 3219322 calls 0.444 user 19.875 sys 23.416 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.004 sys 0.801 real
fetch_ref: 384 calls 0.002 user 0.017 sys 0.025 real
idle: 20057 calls 0.551 user 0.148 sys 404.476 real
init: 1 calls 0.199 user 0.089 sys 1.059 real
overall: 440635392 mem 4.492 user 66.899 sys 2.920 real