File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/5d3e25cade08b5f52c14de06c6320f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ajht04ig because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:09:05,490 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:09:06,344 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:09:06,514 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:09:07,442 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:09:07,616 - cnv_pipe.batch.run_model - INFO - Processing cluster 1199 with 173 probes
2026-06-04 17:09:07,982 - cnv_pipe.batch.run_model.cluster1199 - INFO - Child process started for cluster 1199 with 173 probes
2026-06-04 17:09:59,276 - cnv_pipe.batch.run_model.cluster1199 - INFO - Child process finished cluster 1199. Wrote cluster_1199_samples.csv and cluster_1199_params.csv
2026-06-04 17:09:59,278 - cnv_pipe.batch.run_model - INFO - Cluster 1199 finished in 51.66 seconds. Status: SUCCESS