File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/444ed24e1d83c389849d82cc239180/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAGHE97/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAGHE97/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAGHE97/chr4_22420786-22421189.bed.gz.tbi
[2026-06-04T17:03:32.829856Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:32.830511Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:32.830528Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:32.830533Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:32.830537Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAGHE97'
[2026-06-04T17:03:32.830541Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:32.830546Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:32.830549Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:32.830553Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:03:32.830557Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:32.830560Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:32.830564Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:32.830567Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:32.830571Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:32.831090Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:32.831190Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:32.836931Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:32.837533Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:32.837693Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:32.837913Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:32.838197Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.838747Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.838840Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.838909Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.839026Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.839092Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.839209Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.839271Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.839411Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.839566Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.840099Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.840199Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.840379Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.840512Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.840600Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.841231Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.841612Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.843225Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.843657Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:32.843766Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844192Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844259Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844375Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844442Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844555Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844616Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844732Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844798Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844905Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.844972Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.845087Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.845159Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.845588Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.845807Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.845930Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.845997Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846134Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846201Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846314Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846380Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846489Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846549Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846658Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.846774Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847046Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847367Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847481Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847595Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847726Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847795Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847903Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.847966Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.848074Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.848136Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.848251Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.848312Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.848474Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849046Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849157Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849219Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849330Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849391Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849498Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849561Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849669Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849736Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849869Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.849935Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.850063Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.850308Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.850887Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.850952Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.851062Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.851127Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.852547Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853098Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853227Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853295Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853407Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853471Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853580Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853643Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853772Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853840Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.853953Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.854021Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.854299Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.854901Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.855242Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.855862Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.855977Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.856045Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.856152Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.856214Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.856328Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.856394Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.873089Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.873613Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.873806Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.873969Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.874914Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.875057Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.875245Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.875420Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.875502Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.875831Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.876185Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.876312Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.876730Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.877113Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:32.878325Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.879133Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.881015Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:32.881593Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.882797Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.885184Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:32.886365Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.890379Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:32.893892Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:32.895845Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:32.896531Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:32.899107Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:32.901373Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:33.165177Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.166217Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.168738Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:33.732025Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.733100Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.735816Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:33.797338Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.798404Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.801254Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:33.912510Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.912591Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913433Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.913705Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.916847Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:33.917595Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:33.946159Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.946240Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.947130Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.947474Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.950432Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:33.951623Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:34.212680Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.214152Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.216967Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:34.246248Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.247650Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.250378Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:34.311808Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.313307Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.315987Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:34.377476Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.377605Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.378954Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.379436Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.382104Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:34.383167Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:34.411601Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.412974Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.415540Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:34.778006Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.778121Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.779477Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.779827Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.782807Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:34.783958Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:34.894599Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.895530Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.898232Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:34.927875Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.928799Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.931383Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:34.993342Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.994331Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.997210Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:35.058554Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.059490Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.062498Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:35.123787Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.124687Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.127416Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:35.156729Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.156809Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.157665Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.159364Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.160078Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:35.162168Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:35.191502Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.191573Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.192432Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.192749Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.195316Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:35.196305Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:35.224670Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.225531Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.228582Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:35.390168Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.391094Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.394346Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:35.423158Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.424009Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.426759Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:35.488086Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.488955Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.491617Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:35.522193Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.522967Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.525646Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:35.787708Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.788558Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.790899Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:35.820574Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.821363Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.823916Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:35.853347Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.854157Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.856801Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:35.886247Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.887055Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.889592Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:35.919020Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.919102Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.919854Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.920270Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.923337Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:35.924231Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:35.952844Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.953619Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.956168Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:35.985628Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.986404Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.988999Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:36.018453Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.019224Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.021840Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:36.484569Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.484655Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.485421Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.485672Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.488396Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:36.489594Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:36.517890Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.518686Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.521226Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:36.583012Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.583095Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.583119Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.583888Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.585521Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.586385Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.586780Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:36.589180Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:36.589922Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:36.618647Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.618713Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.618734Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.619415Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.619648Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.619978Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.623180Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:36.624093Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:36.624944Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:36.652981Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.653053Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.653761Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.654633Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.657345Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:36.658589Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:36.663719Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.664339Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.666932Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:36.696522Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.697244Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.699954Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:36.811472Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.812324Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.815145Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:36.846178Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.846877Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.849569Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:36.878804Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.879535Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.882248Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:36.911618Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.912415Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.914902Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:36.928148Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.928758Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.931260Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:37.143265Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.144003Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.146962Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:37.176028Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.176685Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.179287Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:37.341097Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.341844Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.344691Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:37.373880Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.374572Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.377553Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:37.406611Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.407300Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.409885Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:37.439336Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.439948Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.442749Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:37.704364Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.704452Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.705080Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.705533Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.708360Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:37.709410Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:37.739047Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.739679Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.742368Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:37.903836Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.904462Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.907343Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:37.936391Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.937019Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.939553Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:37.969038Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.969663Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.972314Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:37.985563Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.986164Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.988839Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:38.150578Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.151261Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.153930Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:38.183589Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.184170Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.186711Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:38.192090Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.192629Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.195016Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:38.224478Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.225059Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.227667Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:38.256866Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.257427Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.259863Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:38.289272Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.289875Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.292402Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:38.321826Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.321897Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.322492Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.322778Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.325201Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:38.326129Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:38.354834Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.354906Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.354931Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.355440Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.355875Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.357853Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.359154Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:38.360568Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:38.361496Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:38.391373Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.391444Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.391963Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.394442Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:38.423815Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.423894Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.424369Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.426797Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:38.456362Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.821357Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.821878Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.824900Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:38.854554Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.886560Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.887045Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.889530Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:38.951077Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.115335Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.115804Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.118121Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:39.148751Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.262953Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.263388Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.266030Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:39.295572Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.409616Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.410084Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.412526Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:39.442197Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.442462Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.442578Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.443226Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.444095Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.446713Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:39.447976Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:39.448814Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:39.477473Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.477530Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.477550Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.477730Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.479170Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.479749Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:39.481562Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:39.511170Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.511225Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.511377Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.513605Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:39.543318Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.465139Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:51.718975Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:51.718975Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] 
[2026-06-04T17:03:51.718975Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:51.719061Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] 
[2026-06-04T17:03:51.719069Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:51.719076Z] [nf-af444ed24e1d83c389849d82cc239180-7ccc0-nxh7x] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec