File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/99852f86a76f7c813836e97a4b0116/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T17:03:35.662055Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:35.681026Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:35.681055Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:35.681061Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:35.681065Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXolvyVB'
[2026-06-04T17:03:35.681069Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:35.681074Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:35.681077Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:35.681081Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:03:35.681085Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:35.681089Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:35.681092Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:35.681096Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:35.681100Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:35.681831Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:35.681948Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:35.687783Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:35.688357Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:35.688565Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:35.688794Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:35.689066Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689442Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689535Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689607Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689728Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689796Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689913Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689976Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.690091Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.690194Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.690493Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.690834Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.690934Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.691271Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.691574Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.692220Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.692356Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.693876Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.694192Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:35.694540Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695004Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695285Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695412Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695480Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695592Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695653Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695771Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695834Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.695944Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.696009Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.696118Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.696203Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.696564Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.696896Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697253Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697318Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697427Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697511Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697620Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697685Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697793Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697853Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.697964Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.698026Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.698736Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699130Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699250Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699314Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699489Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699557Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699667Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699731Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699843Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.699904Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.700017Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.700084Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.700216Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.700455Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.700920Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.700987Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701099Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701159Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701303Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701372Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701488Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701559Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701670Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.701734Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.714956Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.715115Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.715195Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.715358Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.715429Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.715513Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.715585Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.716812Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.716896Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.716946Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:35.721651Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.722340Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.722528Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.722756Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.723083Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.723911Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.724934Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.725915Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.726955Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.730799Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:35.733042Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:35.736377Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:35.738895Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:35.740481Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:35.740955Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:35.743173Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:35.743561Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:35.843758Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.844809Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.847447Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:36.359932Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.360783Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.363407Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:36.392918Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.393707Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.396177Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:36.458013Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.458809Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.461617Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:36.523127Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.524223Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.526887Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:36.788755Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.789514Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.792293Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:37.555199Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.555310Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.556044Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.556380Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.559449Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:37.560354Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:37.671321Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.672153Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.674858Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:37.704232Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.704990Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.707667Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:37.708850Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.709496Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.712133Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:37.773705Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.773776Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.773800Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.774495Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.774799Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.775170Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.778163Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:37.779558Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:37.780208Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:37.807783Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.807851Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.808756Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.808997Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.809452Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.812293Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:37.812990Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.813421Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:37.815203Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:37.844993Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.845067Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.845094Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.845723Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.845960Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.846210Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.850710Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:37.851066Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:37.851889Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:37.911498Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.911588Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.912219Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.912465Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.915565Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:38.027162Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.027814Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.030464Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:38.060169Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.060864Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.063388Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:38.375425Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.376171Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.379048Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:38.408155Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.408822Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.411081Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:38.440862Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.441475Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.444261Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:38.756324Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.757048Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.759621Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:38.821436Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.822108Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.824966Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:38.854163Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.854769Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.857271Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:39.019155Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.019856Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.022411Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:39.052011Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.052557Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.054956Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:39.116554Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.117211Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.119720Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:39.132990Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.133552Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.136028Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:39.165563Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.166160Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.168477Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:39.169883Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.170435Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.172810Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:39.202288Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.202890Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.205692Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:39.278007Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:39.317586Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.318270Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.320831Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:39.350465Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.351071Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.353828Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:39.415163Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.415771Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.418499Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:39.447840Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.448501Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.451352Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:39.662933Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.663579Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.666423Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:39.695451Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.695547Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.696065Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.696377Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.699473Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:39.700481Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:39.760938Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.761579Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.764098Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:39.825603Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.826198Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.828946Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:39.890394Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.891007Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.893953Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:39.955231Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.955794Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.959047Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:40.220545Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.221100Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.223667Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:40.286350Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.286881Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.289764Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:40.319108Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.319658Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.322294Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:40.351727Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.352233Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.354719Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:40.384405Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.599043Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.599136Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.599585Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.600017Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.602894Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:40.603485Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:40.632931Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.633000Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.897559Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.898054Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.900646Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:40.929961Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.094264Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.094754Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.097398Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:41.126629Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.340946Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.341027Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.341050Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.341436Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.341808Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.342326Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.344897Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:41.346222Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:41.347140Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:41.375847Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.375910Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.375932Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.376184Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.376346Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.376657Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.376934Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.381369Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:41.381637Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:41.382090Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:41.408813Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.408868Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.408891Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.409129Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.409410Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.411762Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:41.412183Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:41.441551Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.441615Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.441795Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.443889Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:41.473722Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.247873Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:54.569420Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:54.569420Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] 
[2026-06-04T17:03:54.569420Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:54.569507Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] 
[2026-06-04T17:03:54.569515Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:54.569522Z] [nf-8f99852f86a76f7c813836e97a4b0116-aa8ed-84cp2] [584_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec