cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144248877, elapsed 0.0s, est remaining 0.9s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 2116
progress 10% @chr9:36903627, elapsed 0.1s, est remaining 0.7s, peak mem 81MB, user 0.0s, sys 0.3s, output queue size 4332
progress 15% @chr9:96655090, elapsed 0.1s, est remaining 0.6s, peak mem 90MB, user 0.1s, sys 0.4s, output queue size 6115
progress 20% @chr9:128941445, elapsed 0.2s, est remaining 0.6s, peak mem 99MB, user 0.1s, sys 0.6s, output queue size 831
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.6s, peak mem 108MB, user 0.1s, sys 0.7s, output queue size 3585
progress 30% @chr10:69200280, elapsed 0.3s, est remaining 0.6s, peak mem 117MB, user 0.2s, sys 0.9s, output queue size 5973
progress 35% @chr10:100498029, elapsed 0.3s, est remaining 0.5s, peak mem 129MB, user 0.2s, sys 1.1s, output queue size 8629
progress 40% @chr11:308193, elapsed 0.3s, est remaining 0.5s, peak mem 144MB, user 0.3s, sys 1.3s, output queue size 11208
progress 45% @chr11:17788085, elapsed 0.4s, est remaining 0.5s, peak mem 150MB, user 0.3s, sys 1.4s, output queue size 13364
progress 50% @chr11:61397774, elapsed 0.4s, est remaining 0.4s, peak mem 159MB, user 0.3s, sys 1.6s, output queue size 15731
progress 55% @chr11:73015809, elapsed 0.5s, est remaining 0.4s, peak mem 171MB, user 0.4s, sys 1.9s, output queue size 18399
progress 60% @chr11:114401698, elapsed 0.5s, est remaining 0.3s, peak mem 183MB, user 0.4s, sys 2.1s, output queue size 20691
progress 65% @chr12:6460855, elapsed 0.6s, est remaining 0.3s, peak mem 192MB, user 0.5s, sys 2.3s, output queue size 23049
progress 70% @chr12:31689007, elapsed 0.6s, est remaining 0.3s, peak mem 201MB, user 0.5s, sys 2.5s, output queue size 25142
progress 75% @chr12:55968049, elapsed 0.6s, est remaining 0.2s, peak mem 207MB, user 0.6s, sys 2.6s, output queue size 27618
progress 80% @chr12:100047943, elapsed 0.7s, est remaining 0.2s, peak mem 225MB, user 0.6s, sys 2.8s, output queue size 30349
progress 85% @chr12:123756815, elapsed 0.7s, est remaining 0.1s, peak mem 234MB, user 0.7s, sys 3.1s, output queue size 33205
progress 90% @chr13:48459668, elapsed 0.8s, est remaining 0.1s, peak mem 240MB, user 0.7s, sys 3.3s, output queue size 35572
progress 95% @chr14:22766522, elapsed 0.8s, est remaining 0.0s, peak mem 258MB, user 0.7s, sys 3.5s, output queue size 37827
progress 100% @chr14:61766876, elapsed 0.9s, est remaining 0.0s, peak mem 267MB, user 0.8s, sys 3.7s, output queue size 40381
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692773
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.000 sys 0.018 real
advance: 50143 calls 0.014 user 0.000 sys 0.019 real
calc: 98785 calls 0.006 user 0.009 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.001 sys 1.597 real
fetch: 98785 calls 0.008 user 0.006 sys 0.019 real
fetch_ref: 98785 calls 0.141 user 0.086 sys 0.381 real
idle: 39 calls 0.003 user 0.010 sys 21.259 real
init: 1 calls 0.048 user 0.002 sys 0.043 real
region: 98785 calls 0.000 user 0.013 sys 0.020 real
tracker: 98785 calls 0.038 user 0.000 sys 0.090 real
overall: 283254784 mem 1.315 user 5.739 sys 2.713 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory