File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6fe4ba151a841b5fc8d69650717582/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXXuf4lr/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXXuf4lr/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXXuf4lr/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:03:40.905068Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:40.906144Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:40.906154Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:40.906159Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:40.906164Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXXuf4lr'
[2026-06-04T17:03:40.906168Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:40.906173Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:40.906177Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:40.906189Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:03:40.906196Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:40.906200Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:40.906204Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:40.906208Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:40.906217Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:40.907058Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:40.907156Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:40.912919Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:40.913778Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:40.914000Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:40.914223Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:40.914538Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.914865Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.914954Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915025Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915155Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915224Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915343Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915410Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915538Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.915634Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.916070Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.916392Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.916485Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.917401Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.917668Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.917957Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.920049Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:40.920397Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.920819Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.920886Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921079Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921150Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921278Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921349Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921458Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921521Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921638Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.921701Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922061Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922331Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922449Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922517Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922651Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922757Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922871Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.922937Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923050Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923112Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923223Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923288Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923574Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923953Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.924068Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.924135Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.924795Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.924867Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.925032Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.925214Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.925785Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.925858Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.925973Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926041Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926189Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926254Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926371Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926433Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926548Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926614Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926747Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.926948Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927500Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927566Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927682Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927745Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927851Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927919Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.943337Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.943703Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.943780Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.943948Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.944025Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.944119Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.944189Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.944330Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.944409Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:40.945542Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:40.948288Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.948885Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.949288Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.949699Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.950666Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.951594Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.952702Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.953597Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.956032Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.956597Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:40.960777Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:40.963143Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:40.966640Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:40.971874Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:40.972953Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:40.973276Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:40.975568Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:41.073313Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.073394Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.074166Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.075265Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.080611Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:41.081663Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:41.192453Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.193278Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.196738Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:41.408518Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.409358Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.412519Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:41.473923Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.474981Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.478236Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:42.041130Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.041888Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.045822Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:42.206615Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.207357Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.210457Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:42.272124Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.272837Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.275910Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:42.387441Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.387526Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.388198Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.388815Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.392283Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:42.393170Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:42.453345Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.453437Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.454109Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.454659Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.458103Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:42.459160Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:42.488884Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.489601Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.492434Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:42.521659Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.522353Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.525481Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:42.538268Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.538896Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.541806Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:42.571083Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.571308Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.571896Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.572254Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.576638Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:42.577887Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:42.608676Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.609281Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.612019Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:43.024538Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.024619Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.025377Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.025745Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.029378Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:43.029720Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:43.058996Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.059624Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.062535Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:43.091729Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.092349Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.095371Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:43.306811Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.307485Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.310631Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:43.421991Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.422641Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.425844Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:43.456148Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.456756Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.459908Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:43.621104Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.621763Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.625143Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:43.685899Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.686458Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.689444Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:43.901190Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.901854Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.905241Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:43.966413Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.967027Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.970506Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:44.031174Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.031843Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.035209Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:44.347406Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.348572Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.349151Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.351258Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.352020Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:44.354445Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:44.383591Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.384126Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.387203Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:44.448523Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.449115Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.451835Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:44.513316Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.513893Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.516990Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:44.678682Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.679325Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.682337Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:44.743621Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.744221Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.747957Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:44.752415Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.752947Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.756139Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:44.817711Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.817798Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.817824Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.818344Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.820427Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.820928Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.821742Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:44.824594Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:44.825733Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:44.853848Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.854486Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.857570Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:44.858357Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.858845Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.861831Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:44.892333Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.892411Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.892895Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.893290Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.896701Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:44.897644Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:44.925782Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.926297Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.931567Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:44.943156Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.943630Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.946362Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:44.959419Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.959871Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.962614Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:44.991805Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.992313Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.995219Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:45.357497Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.357587Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.358061Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.358493Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.361624Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:45.375522Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.376006Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.378726Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:45.391965Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:45.408420Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.408491Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.408513Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.440582Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.441056Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.443772Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:45.505064Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.820024Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.820490Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.823168Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:45.852451Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.066785Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.067213Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.070079Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:46.131299Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.295555Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.295965Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.298619Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:46.328062Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.843265Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.843701Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.846397Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:46.875747Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.875981Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.876093Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.876371Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.876768Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.882183Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:46.882429Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:46.883220Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:46.909430Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.909494Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.909518Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.909701Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.910070Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.912934Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:46.913573Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:46.942359Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.942438Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.942620Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.945442Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:46.974571Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.498971Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:59.794865Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:59.794865Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] 
[2026-06-04T17:03:59.794865Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:59.794944Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] 
[2026-06-04T17:03:59.794951Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:59.794958Z] [nf-0c6fe4ba151a841b5fc8d69650717582-3a1f0-9zfsz] [611_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec