cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --algo AlignmentStat HCC1395_BL.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_BL.sentieon.insert_size_metrics --algo QualDistribution HCC1395_BL.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_BL.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_BL.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:158000001, elapsed 0.0s, est remaining 0.5s, peak mem 81MB, user 0.0s, sys 0.3s, output queue size 4
progress 10% @chr2:70000001, elapsed 0.0s, est remaining 0.4s, peak mem 81MB, user 0.1s, sys 1.0s, output queue size 3
progress 15% @chr2:231000001, elapsed 0.1s, est remaining 0.4s, peak mem 81MB, user 0.2s, sys 1.5s, output queue size 4
progress 20% @chr3:150000001, elapsed 0.1s, est remaining 0.4s, peak mem 81MB, user 0.3s, sys 2.3s, output queue size 5
progress 25% @chr4:136000001, elapsed 0.1s, est remaining 0.4s, peak mem 81MB, user 0.4s, sys 2.8s, output queue size 2
progress 30% @chr5:83000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.5s, sys 3.4s, output queue size 3
progress 35% @chr6:61000001, elapsed 0.2s, est remaining 0.3s, peak mem 81MB, user 0.5s, sys 4.2s, output queue size 4
progress 40% @chr7:54000001, elapsed 0.2s, est remaining 0.3s, peak mem 81MB, user 0.6s, sys 4.8s, output queue size 3
progress 45% @chr8:53000001, elapsed 0.2s, est remaining 0.3s, peak mem 81MB, user 0.6s, sys 5.4s, output queue size 7
progress 50% @chr9:72000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.7s, sys 6.1s, output queue size 3
progress 55% @chr10:93000001, elapsed 0.3s, est remaining 0.2s, peak mem 81MB, user 0.8s, sys 6.7s, output queue size 4
progress 60% @chr11:120000001, elapsed 0.3s, est remaining 0.2s, peak mem 81MB, user 0.9s, sys 7.2s, output queue size 6
progress 65% @chr13:13000001, elapsed 0.3s, est remaining 0.2s, peak mem 81MB, user 1.0s, sys 7.9s, output queue size 2
progress 70% @chr14:61000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.1s, sys 8.5s, output queue size 2
progress 75% @chr16:9000001, elapsed 0.4s, est remaining 0.1s, peak mem 81MB, user 1.2s, sys 9.0s, output queue size 5
progress 80% @chr17:80000001, elapsed 0.4s, est remaining 0.1s, peak mem 81MB, user 1.2s, sys 9.7s, output queue size 4
progress 85% @chr20:21000001, elapsed 0.4s, est remaining 0.1s, peak mem 81MB, user 1.3s, sys 10.4s, output queue size 4
progress 90% @chrX:44000001, elapsed 0.5s, est remaining 0.1s, peak mem 109MB, user 1.7s, sys 10.8s, output queue size 114
progress 95% @chrY:38000001, elapsed 0.5s, est remaining 0.0s, peak mem 129MB, user 2.4s, sys 11.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 169MB, user 5.5s, sys 11.6s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 51395363
reads: 1001089
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.337 user 5.861 sys 7.284 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.005 sys 1.251 real
idle: 74 calls 0.032 user 0.045 sys 51.340 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 177995776 mem 5.697 user 12.131 sys 2.297 real