cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:157000001, elapsed 0.3s, est remaining 6.0s, peak mem 389MB, user 0.5s, sys 8.0s, output queue size 26
progress 10% @chr2:71000001, elapsed 0.6s, est remaining 5.4s, peak mem 692MB, user 1.1s, sys 16.2s, output queue size 21
progress 15% @chr2:239000001, elapsed 0.9s, est remaining 5.0s, peak mem 908MB, user 1.6s, sys 24.4s, output queue size 35
progress 20% @chr3:153000001, elapsed 1.2s, est remaining 4.6s, peak mem 1103MB, user 2.2s, sys 32.4s, output queue size 8
progress 25% @chr4:103000001, elapsed 1.4s, est remaining 4.3s, peak mem 1337MB, user 2.8s, sys 40.1s, output queue size 13
progress 30% @chr5:94000001, elapsed 1.7s, est remaining 3.9s, peak mem 1535MB, user 3.3s, sys 47.8s, output queue size 15
progress 35% @chr6:52000001, elapsed 1.9s, est remaining 3.6s, peak mem 1634MB, user 3.8s, sys 55.5s, output queue size 13
progress 40% @chr7:17000001, elapsed 2.2s, est remaining 3.3s, peak mem 1757MB, user 4.3s, sys 63.0s, output queue size 38
progress 45% @chr8:62000001, elapsed 2.5s, est remaining 3.0s, peak mem 1895MB, user 4.7s, sys 70.9s, output queue size 17
progress 50% @chr9:51000001, elapsed 2.7s, est remaining 2.7s, peak mem 1973MB, user 5.1s, sys 78.4s, output queue size 22
progress 55% @chr10:69000001, elapsed 3.0s, est remaining 2.4s, peak mem 2003MB, user 5.6s, sys 85.9s, output queue size 26
progress 60% @chr11:132000001, elapsed 3.3s, est remaining 2.2s, peak mem 2066MB, user 6.0s, sys 93.4s, output queue size 25
progress 65% @chr13:22000001, elapsed 3.5s, est remaining 1.9s, peak mem 2141MB, user 6.6s, sys 101.5s, output queue size 15
progress 70% @chr14:42000001, elapsed 3.8s, est remaining 1.6s, peak mem 2171MB, user 7.0s, sys 109.0s, output queue size 33
progress 75% @chr16:13000001, elapsed 4.1s, est remaining 1.4s, peak mem 2198MB, user 7.6s, sys 116.7s, output queue size 14
progress 80% @chr17:65000001, elapsed 4.3s, est remaining 1.1s, peak mem 2243MB, user 8.0s, sys 124.0s, output queue size 31
progress 85% @chr20:32000001, elapsed 4.6s, est remaining 0.8s, peak mem 2282MB, user 8.4s, sys 131.4s, output queue size 26
progress 90% @chr21:6000001, elapsed 5.1s, est remaining 0.6s, peak mem 2714MB, user 13.5s, sys 134.8s, output queue size 114
progress 95% @chrY:34000001, elapsed 5.3s, est remaining 0.3s, peak mem 2735MB, user 17.1s, sys 137.0s, output queue size 276
progress 100% @chr21:41000001, elapsed 8.4s, est remaining 0.0s, peak mem 2741MB, user 34.3s, sys 140.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047063
output file size: 93248822
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.021 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 2.046 user 18.183 sys 19.602 real
done: 1 calls 0.412 user 0.773 sys 1.191 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.000 sys 8.475 real
fetch: 3219323 calls 0.341 user 16.484 sys 17.472 real
fetch_reads: 3219322 calls 0.403 user 17.151 sys 17.577 real
fetch_ref: 13004 calls 0.053 user 0.014 sys 0.079 real
fetch_vcf: 13004 calls 1.389 user 0.179 sys 1.834 real
idle: 1866 calls 2.382 user 0.300 sys 143.534 real
init: 1 calls 0.009 user 0.001 sys 0.027 real
update: 13229 calls 9.020 user 1.030 sys 11.243 real
write: 3219323 calls 13.274 user 17.740 sys 30.651 real
overall: 2874339328 mem 41.888 user 142.042 sys 10.914 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.027 user 0.003 sys 0.029 real
done: 1 calls 0.054 user 0.006 sys 0.060 real
idle: 61 calls 0.002 user 0.000 sys 31.331 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.073 user 0.042 sys 1.049 real