File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/88b9965c8c006c98458a79e527d821/.command.log
Size
55.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/88b9965c8c006c98458a79e527d821/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/914e05afb20a55a14a8afd3d114544/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/914e05afb20a55a14a8afd3d114544/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/88b9965c8c006c98458a79e527d821/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:38.954022Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:38.954508Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:38.954523Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:38.954529Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:38.954535Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX1FRgX6'
[2026-06-04T17:03:38.954540Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:38.954546Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:38.954551Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:38.954556Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-04T17:03:38.954560Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:38.954565Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:38.954570Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:38.954581Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:38.954586Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:38.955533Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:38.955625Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:38.962639Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:38.963163Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:38.963356Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:38.963552Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:38.963795Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.964800Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.964913Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.965061Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.965436Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.965517Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.965672Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.966095Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.966408Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.966647Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.966775Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.966978Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.967099Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.968944Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.969247Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:38.969389Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.969760Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.969845Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.969989Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.970065Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.970298Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.970389Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.970533Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.970619Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.970946Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971236Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971382Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971462Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971598Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971677Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971810Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.971930Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.972076Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.972153Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.972425Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.972762Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.972932Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973014Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973195Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973271Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973411Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973489Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973639Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.973744Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.974296Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.974377Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.974521Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.974670Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.974807Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.974886Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.975018Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.975098Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.975233Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.975432Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.975976Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.976052Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.992735Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993162Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993253Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993432Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993525Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993627Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993725Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993862Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.993947Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.994007Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:38.996092Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.997112Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.997553Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.997859Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.998297Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.998747Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.999216Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.000952Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.001656Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.006812Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:39.010830Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:03:39.012723Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:03:39.016355Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:03:39.019412Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:03:39.019795Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:03:39.020806Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:03:39.118565Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.118628Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.118658Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.119393Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.119756Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.120110Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.124634Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:39.129414Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:03:39.185963Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.186757Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.191182Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:40.077806Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:03:40.103152Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.103217Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.103902Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.104276Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.108387Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:03:40.218384Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.219143Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.222485Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:03:40.251317Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.252021Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.254998Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:03:40.934947Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:40.967326Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.967415Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.968138Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.968402Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.971748Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:03:40.972897Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:03:41.000408Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.001158Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.004163Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:03:41.065103Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.065868Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.068675Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:03:41.129646Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.130286Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.133328Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:41.194299Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.195033Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.198148Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:03:41.597176Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:03:41.609783Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.609890Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.610540Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.610830Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.613375Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:03:41.614437Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:03:41.674698Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.674766Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.675339Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.675681Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.679248Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:03:42.041625Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.042288Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.045100Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:03:42.074280Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.074968Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.077591Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:03:42.106807Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.107481Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.110534Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:03:42.139351Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.140157Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.140419Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.141125Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.144231Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:03:42.145382Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:42.205166Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.205227Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.205783Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.206115Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.209515Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:03:42.210370Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:03:42.270134Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.270836Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.273675Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:03:42.334873Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.335513Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.338424Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:42.449698Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.450345Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.453770Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:03:42.664934Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.665554Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.668124Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:03:42.729363Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.729994Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.732961Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:03:42.994274Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.994359Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.994938Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.995176Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.997800Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:03:42.998729Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.999007Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:42.999406Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.001798Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:03:43.031012Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.031062Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.031478Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.031725Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.035393Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:03:43.036551Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:03:43.447280Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.447882Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.450974Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:03:43.479696Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.480478Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.483428Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:03:43.512443Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.512996Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.515668Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:03:43.531041Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:03:43.544737Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.544848Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.545480Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.545818Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.546152Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.546658Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.549251Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:03:43.550253Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:03:43.551316Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:43.578623Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.578674Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.579271Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.579454Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.581866Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:43.611459Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.875657Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.876126Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.878977Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:03:43.907769Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.722941Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.723396Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.726185Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:03:44.755341Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.019533Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.019989Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.022758Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:03:45.051751Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.265901Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.266323Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.268428Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:03:45.297965Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.912607Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.912986Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.915070Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:03:45.944647Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.944891Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.945020Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.945228Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.945664Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.950412Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:45.950642Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:45.976185Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:45.978897Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.978958Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.978984Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.979220Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.979465Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.981952Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:45.982565Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:46.011223Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.011269Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.011449Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.013290Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:46.043070Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.512102Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:57.842799Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:57.842799Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] 
[2026-06-04T17:03:57.842799Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:57.842857Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] 
[2026-06-04T17:03:57.842866Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:57.842874Z] [nf-2b88b9965c8c006c98458a79e527d821-4972b-mf9x6] [761_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec