Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8bd0c230e524b7e1388b18e755b8fa/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/2b7146b780e52df669c1c584e38584/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/2b7146b780e52df669c1c584e38584/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-kigwaoyh because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:05:31,364 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:05:32,217 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:05:32,387 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:05:33,350 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:05:33,543 - cnv_pipe.batch.run_model - INFO - Processing cluster 71 with 169 probes
2026-06-04 17:05:33,915 - cnv_pipe.batch.run_model.cluster71 - INFO - Child process started for cluster 71 with 169 probes
2026-06-04 17:06:25,517 - cnv_pipe.batch.run_model.cluster71 - INFO - Child process finished cluster 71. Wrote cluster_71_samples.csv and cluster_71_params.csv
2026-06-04 17:06:25,518 - cnv_pipe.batch.run_model - INFO - Cluster 71 finished in 51.98 seconds. Status: SUCCESS