Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8bd0c230e524b7e1388b18e755b8fa/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/229fd731f1d90bda13c284a4f0278d/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/b1a6d1083baaabdf91e6ec345c74b2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/b1a6d1083baaabdf91e6ec345c74b2/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gcds5e2q because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:08:40,290 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:08:41,114 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:08:41,281 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:08:42,170 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:08:42,318 - cnv_pipe.batch.run_model - INFO - Processing cluster 975 with 199 probes
2026-06-04 17:08:42,688 - cnv_pipe.batch.run_model.cluster975 - INFO - Child process started for cluster 975 with 199 probes
2026-06-04 17:09:40,620 - cnv_pipe.batch.run_model.cluster975 - INFO - Child process finished cluster 975. Wrote cluster_975_samples.csv and cluster_975_params.csv
2026-06-04 17:09:40,621 - cnv_pipe.batch.run_model - INFO - Cluster 975 finished in 58.30 seconds. Status: SUCCESS