File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/dee8efe563f6c59aed0a652c87c896/.command.log
Size
102.5 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr6_138229684-138229952.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/dee8efe563f6c59aed0a652c87c896/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/dee8efe563f6c59aed0a652c87c896/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXz5kGvI/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXz5kGvI/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXz5kGvI/chr6_138229684-138229952.bed.gz.tbi
[2026-06-04T17:03:35.051856Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:35.052893Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:35.052906Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:35.052910Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:35.052914Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXz5kGvI'
[2026-06-04T17:03:35.052919Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:35.052924Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:35.052928Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:35.052932Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:03:35.052936Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:35.052940Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:35.052946Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:35.052950Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:35.052955Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:35.053440Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:35.053567Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:35.059541Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:35.060457Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:35.060731Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:35.061020Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:35.061188Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.061709Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.061801Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.061875Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.061995Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.062207Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.062638Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.062770Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.063068Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.064053Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.064759Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.067046Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.067421Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:35.067720Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.067966Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.068287Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.068735Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069024Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069192Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069266Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069482Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069551Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069676Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069756Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069873Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.069944Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.070230Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.070467Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.070875Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071224Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071341Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071439Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071560Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071623Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071735Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071797Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071906Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.071969Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.072082Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.072155Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.072390Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.072785Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.072900Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.072965Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073068Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073133Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073246Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073361Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073479Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073543Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073648Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073710Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.073884Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.074062Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.074601Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.074673Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.074797Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.074868Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.074974Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075037Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075153Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075216Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075330Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075399Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075508Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.075605Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.076037Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.076573Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.076709Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.076780Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.076894Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.076957Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.077067Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.077132Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.078780Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079383Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079517Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079587Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079698Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079765Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079874Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.079937Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.080057Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.080119Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.080301Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.080424Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081118Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081199Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081309Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081375Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081492Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081616Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081732Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081796Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081912Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.081974Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.082279Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.082973Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083094Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083160Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083322Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083386Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083496Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083558Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083666Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083731Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083836Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.083904Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.084490Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.085088Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.087884Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.088229Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.089488Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.089622Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.103633Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.104385Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.104675Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.104752Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.105977Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.106124Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.106349Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.106775Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.107040Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.107492Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.108035Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.108628Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.109297Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.110242Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.110725Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.111715Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:35.112194Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.113194Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:35.113490Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.120375Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:35.123699Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:35.129088Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:03:35.129847Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:03:35.134719Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:03:35.138265Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:35.139462Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:03:35.252982Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.253064Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.254104Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.254691Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.261283Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:03:35.263388Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:03:35.672423Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.673690Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.677066Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:03:36.089321Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.089415Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.090569Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.091243Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.095426Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:36.096129Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:03:36.124589Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.125748Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.129072Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:36.190205Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.190298Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.191385Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.191773Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.195855Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:36.197309Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:36.256723Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.256800Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.257798Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.258090Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.261398Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:03:36.262972Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:03:36.323035Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.324189Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.327848Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:03:36.539832Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.541048Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.544585Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:03:36.551364Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:36.557354Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.557426Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.558382Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.559020Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.562153Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:03:36.563345Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:03:36.592518Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.593724Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.594196Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.597708Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.598087Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:03:36.601547Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:03:36.862985Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.864172Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.867641Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:03:36.928746Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.929887Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.933560Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:37.395770Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.396921Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.400522Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:03:37.461476Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.462646Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.465716Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:03:37.527412Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.527531Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.527559Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.528635Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.529226Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.531617Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.533643Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:03:37.535856Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:03:37.536939Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:03:37.598234Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.598328Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.599292Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.601328Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.603420Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:03:37.604792Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:03:37.633917Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.635025Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.638582Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:03:37.667626Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.668630Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.671679Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:37.684604Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.685541Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.689062Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:03:37.750167Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.751230Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.754926Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:03:37.767672Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.768612Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.772096Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:37.883223Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.884193Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.887760Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:37.949024Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.949122Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.950038Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.951877Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.954759Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:03:37.955574Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:38.018459Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.018630Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.018671Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.020131Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.020642Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.021123Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.027078Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:03:38.027420Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:38.028372Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:38.086557Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.087544Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.090608Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:03:38.119568Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.120525Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.123231Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:03:38.152483Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.153357Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.156436Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:03:38.719335Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.720547Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.724158Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:03:38.785184Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.786175Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.789599Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:38.850520Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.851759Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.855123Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:03:39.016482Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.016595Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.017542Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.017966Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.021911Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:03:39.022592Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:03:39.082812Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.082903Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.083779Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.084178Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.088249Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:39.116468Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.117318Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.120447Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:03:39.143203Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:03:39.149360Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.150660Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.150929Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.153836Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.154553Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:03:39.156915Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:39.218218Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.218288Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.219071Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.219521Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.222994Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:03:39.225392Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:03:39.252172Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.253061Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.256488Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:03:39.317467Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.318310Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.321719Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:03:39.382832Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.383713Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.387000Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:39.448100Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.448962Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.452062Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:03:39.513166Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.513960Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.517106Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:03:39.546213Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.547193Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.549244Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.550354Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:39.550466Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.552959Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:39.582693Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.583460Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.586590Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:03:39.615442Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.616238Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.619012Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:39.680457Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.681359Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.684752Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:03:39.745616Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.746531Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.749893Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:39.779059Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.779887Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.783122Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:39.844567Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.845429Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.848698Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:03:40.361121Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.361995Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.365462Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:40.426919Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.427927Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.430981Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:40.459909Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.459987Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.460757Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.461370Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.461927Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.464885Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:03:40.466552Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.467377Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:03:40.469544Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:40.498954Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.499700Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.502645Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:03:40.531870Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.532615Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.535534Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:40.596874Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.597674Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.601121Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:40.629986Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.630707Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.633594Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:03:40.663030Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.663694Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.668205Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:40.778356Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.779092Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.782228Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:40.843527Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.844402Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.848156Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:40.876726Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.877452Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.880585Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:40.881411Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.881995Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.885775Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:03:40.885909Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.886479Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.889922Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:03:40.890725Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.891257Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.893788Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:03:40.923158Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923227Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923254Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.923856Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.924231Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.924722Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.927641Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.928431Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:03:40.932383Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:40.933535Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.934180Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:40.937380Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:40.966363Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.967016Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.970083Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:03:40.999215Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.999307Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.999332Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.999917Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.000249Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.000569Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.003615Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.006267Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:41.007030Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:41.007158Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.010144Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:41.033475Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:03:41.039143Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.039219Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.039251Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.039795Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.040129Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.040587Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.043932Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:03:41.045154Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:03:41.045993Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:41.106256Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.106353Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.106379Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.106944Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.107485Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.108006Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.111132Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:03:41.114060Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:41.115188Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:03:41.173426Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.173524Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.174114Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.174541Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.178421Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:41.179300Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:41.239231Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.239897Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.243268Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:41.304590Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.419040Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.419694Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.423205Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:03:41.484642Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.799739Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.800458Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.803807Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:03:41.865147Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.929389Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.930150Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.933770Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:03:41.994534Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.058786Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.059314Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.063051Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:42.123844Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.188192Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.188715Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.191948Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:03:42.252976Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.284911Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.285370Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.288871Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:42.349620Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.564077Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.564847Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.567782Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:03:42.628871Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.629192Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.629322Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.629665Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.629927Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.634970Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:42.636516Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:42.637837Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:42.662070Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.662324Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.664485Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.664942Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.665414Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:42.668053Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:42.673465Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.705255Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.705321Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.705504Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.708737Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:42.737624Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.708692Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:53.941882Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:53.941882Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] 
[2026-06-04T17:03:53.941882Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:53.941989Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] 
[2026-06-04T17:03:53.941999Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:53.942006Z] [nf-d8dee8efe563f6c59aed0a652c87c896-9d4a9-ngqh7] [610_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec