File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/626930e519aca80d7580bb047542dc/.command.log
Size
55.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr16_25246607-25247490.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/626930e519aca80d7580bb047542dc/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/2c338fb82705e4e0b4e7a512d35d58/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/626930e519aca80d7580bb047542dc/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:38.382865Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:38.383599Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:38.383609Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:38.383614Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:38.383618Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgdU8PY'
[2026-06-04T17:03:38.383622Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:38.383627Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:38.383630Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:38.383634Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-04T17:03:38.383637Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:38.383641Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:38.383645Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:38.383648Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:38.383652Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:38.384181Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:38.384278Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:38.389934Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:38.390505Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:38.390881Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:38.391131Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:38.391403Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.392318Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.392412Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.392496Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.392982Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.393179Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.393660Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.393998Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.394137Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.395447Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.395959Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.396268Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.396403Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.396692Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:38.397052Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.397433Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.397551Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.397618Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.397849Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.398522Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.398698Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.398764Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.398873Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.398938Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399048Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399113Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399225Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399287Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399395Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399462Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399572Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399717Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399839Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.399898Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.400138Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.400852Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.400960Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401022Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401128Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401189Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401304Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401366Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401473Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401539Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401649Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401711Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401825Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.401932Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.402050Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.402118Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.402234Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.402453Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.403147Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.403212Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.403321Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.403382Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416227Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416322Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416415Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416554Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416626Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416707Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416773Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416876Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416942Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:38.416988Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:38.426252Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.426835Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.427140Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.427834Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.430052Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.430518Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:03:38.430848Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.431570Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.435253Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.436195Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:38.441334Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:03:38.441975Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.444886Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:38.445253Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:03:38.450637Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:03:38.451395Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:03:38.452653Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:03:38.559540Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.559637Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.559663Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.560356Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.560692Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.561593Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.566175Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:03:38.571523Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:03:38.572795Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:03:39.384250Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.385138Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.389496Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:03:39.550735Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.551452Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.554807Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:03:39.617163Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.617862Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.621632Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:39.650412Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.651149Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.654242Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:03:39.654771Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.655374Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.658983Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:03:39.688158Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.688843Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.692671Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:39.692992Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.693605Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.696992Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:03:39.725836Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.726536Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.729252Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.730009Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.730642Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:03:39.733438Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:03:40.546652Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.546765Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.547430Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.548000Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.551725Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:03:40.552767Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:03:40.613114Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.613778Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.617794Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:03:40.678848Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.679539Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.683594Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:03:40.744696Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.745358Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.749130Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:03:40.910323Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.911003Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.914074Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:03:40.975449Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.976045Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.979190Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:03:41.341314Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.341950Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.345225Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:03:41.406310Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.406924Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.410788Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:03:41.471948Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.472588Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.476334Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:03:41.477485Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.478028Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.481249Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:03:41.542722Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.543315Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.546742Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:03:41.607983Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.608594Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.612240Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:03:41.723720Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.724380Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.727190Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:03:41.789868Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.789970Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.790470Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.791066Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.794833Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:03:41.795611Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:03:41.855711Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.856266Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.859323Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:41.920812Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.921354Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.924529Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:41.985851Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.986407Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.990508Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:03:42.251974Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.252570Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.255423Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:03:42.316993Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.317565Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.320567Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:42.381829Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.382387Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.385451Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:03:42.446774Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.447326Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.451275Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:03:42.512309Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.512846Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.516276Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:03:42.577272Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.577785Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.582059Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:42.843218Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.843749Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.846978Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:03:42.908055Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.908136Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.908549Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.909218Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.913523Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:03:42.914956Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:03:42.976309Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.976387Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.976419Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.976836Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.977517Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.980700Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:03:42.981934Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:03:43.010928Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.011351Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.013308Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.013984Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:43.016930Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.024731Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.025101Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.027691Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:03:43.057317Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.057386Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.057409Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.057750Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.060835Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:03:43.123150Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.187344Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.187751Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.191026Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:03:43.252346Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.516729Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.517142Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.520713Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:43.581662Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.581900Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.582034Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.582580Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.583460Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.587327Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:43.588601Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:43.589910Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:43.616751Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.616820Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.616843Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.617047Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.618390Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.619264Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:43.621464Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:43.651053Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.651122Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.651286Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.654520Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:43.683667Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:44.047957Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:48.922090Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:48.922090Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] 
[2026-06-04T17:03:48.922090Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:48.922167Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] 
[2026-06-04T17:03:48.922177Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:48.922184Z] [nf-40626930e519aca80d7580bb047542dc-f633f-gx9nc] [615_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec