File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/82c42ebd684f6e2d8dacea321a1400/.command.err
Size
85.8 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

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[2026-06-04T17:03:37.243445Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:37.245505Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:37.245526Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:37.245532Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:37.245537Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgN6tBp'
[2026-06-04T17:03:37.245541Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:37.245546Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:37.245550Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:37.245554Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:03:37.245558Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:37.245562Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:37.245565Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:37.245569Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:37.245573Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:37.246312Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:37.246394Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:37.252843Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:37.253637Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:37.253980Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:37.254115Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:37.254325Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.254798Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.254892Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.254963Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.255080Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.255145Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.255258Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.255319Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.255818Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.256002Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.256100Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.256272Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.256625Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.257240Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.258789Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.259463Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.259609Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:37.259775Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.259917Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.259981Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.260267Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.260531Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.260852Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.260927Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261040Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261108Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261230Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261301Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261441Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261530Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261649Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261723Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.261933Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262090Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262585Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262650Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262760Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262826Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262938Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.262999Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.263109Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.263169Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.263282Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.263348Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.263453Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.263549Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264291Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264378Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264566Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264635Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264745Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264810Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264917Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.264979Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.265087Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.265147Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.265256Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.265323Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.265772Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266205Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266320Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266380Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266489Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266553Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266657Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266725Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266833Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.266893Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.267001Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.267062Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.267171Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.267424Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.268002Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.268070Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.269555Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270246Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270378Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270454Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270572Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270638Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270749Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270810Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270933Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.270999Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.271117Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.271188Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.271358Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.271564Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272409Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272473Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272585Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272652Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272755Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272818Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.272945Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.273007Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.285555Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.285643Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.285709Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.285927Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.285997Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.286149Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.286216Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.286342Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.286418Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:37.286588Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:37.290661Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.291669Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.292188Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.293980Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.294619Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:37.294951Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.296145Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.297920Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.299444Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:37.300124Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.300701Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.300880Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:37.304567Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:37.307831Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:37.309506Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:37.310399Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:37.313385Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:37.519910Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.521120Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.524712Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:37.585417Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.586464Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.589087Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:38.051500Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.052606Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.056235Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:38.168788Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.168886Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.169890Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.171694Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.172368Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:38.175309Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:38.204638Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.204710Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.205571Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.206080Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.208930Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:38.209809Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:38.239166Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.240025Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.243351Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:38.505362Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.506366Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.509732Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:38.621131Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.621217Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.622247Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.622730Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.625914Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:38.626674Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:38.656110Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.656180Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.657013Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.657593Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.660981Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:38.662472Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:39.023030Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.024054Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.026879Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:39.238565Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.238672Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.239620Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.240187Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.242357Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:39.245069Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:39.273286Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.274236Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.276874Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:39.306298Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.307217Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.309797Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:39.340387Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.341298Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.344498Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:39.405942Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.407188Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.410346Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:39.471737Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.472622Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.475294Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:39.504834Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.505767Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.508374Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:39.569928Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.570007Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.570873Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.571266Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.574660Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:39.575599Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:39.637351Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.637432Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.638265Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.638756Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.642287Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:39.643290Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:39.703440Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.704252Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.707093Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:39.768308Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.769136Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.771922Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:39.833210Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.833989Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.836626Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:39.866015Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.866077Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.866829Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.867410Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.870128Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:39.900356Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:39.900732Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.901494Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.902087Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.903203Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.905995Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:39.907133Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:40.219379Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.220200Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.223451Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:40.334935Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.335838Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.338600Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:40.368149Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.368915Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.371711Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:40.433139Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.433919Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.436823Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:40.548362Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.548450Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.549234Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.549750Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.553120Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:40.553515Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:40.614906Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.615701Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.618901Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:40.780301Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.781178Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.784438Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:40.797264Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.798110Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.801310Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:40.862208Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.862936Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.865643Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:40.978685Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.979459Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:40.982454Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:41.011612Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.012447Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.015273Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:41.227321Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.228105Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.231063Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:41.292086Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.292937Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.295525Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:41.357402Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.358201Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.361588Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:41.374288Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.375005Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.377684Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:41.407097Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.407156Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.407792Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.408531Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.410953Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:41.411856Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:41.425558Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.426211Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.428920Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:41.434101Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.434155Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.434720Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.435248Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.438797Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:41.439861Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:41.469596Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.469668Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.470425Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.470804Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.473812Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:41.501038Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:41.504036Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.504105Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.504728Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.506564Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.507527Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:41.510195Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:41.511181Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.511844Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.514679Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:41.626546Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.627253Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.630012Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:41.692546Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.693285Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.695608Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:41.758538Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.759517Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:41.762380Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:42.073992Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.075031Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.078307Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:42.139201Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.139917Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.142713Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:42.172041Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.172631Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.175646Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:42.176367Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.176955Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.179589Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:42.210145Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.210206Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.210716Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.210985Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.214041Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:42.215092Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:42.243618Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.244200Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.247081Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:42.358575Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.359161Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.362018Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:42.423224Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.423772Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.426978Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:42.488038Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.488660Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.491438Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:42.552942Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.553003Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.553504Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.554054Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.557492Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:42.558683Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:42.618249Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.618798Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.621475Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:42.650775Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.651278Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.654206Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:42.716672Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.717251Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.720186Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:42.781602Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.781660Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.782135Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.782838Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.786654Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:42.787611Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:42.815754Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.815808Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.816284Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.816771Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.819655Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:42.820940Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:42.848837Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.848912Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.848937Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.849741Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.850107Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.850516Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.852911Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:42.855573Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:42.868472Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.868946Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.871698Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:42.884785Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.884843Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.900625Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.114928Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.115388Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.117902Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:43.147432Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.762690Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.763201Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.766023Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:43.796762Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.796826Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.797303Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.799926Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:43.829432Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.829721Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.829827Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.830398Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.830868Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.832416Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:43.835132Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:43.836595Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:43.864867Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.864932Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.864956Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.865158Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.865927Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.868530Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:43.869528Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:43.899242Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.899310Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.899506Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:43.901893Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:43.932350Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.854226Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:56.134108Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:56.134108Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] 
[2026-06-04T17:03:56.134108Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:56.134179Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] 
[2026-06-04T17:03:56.134187Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:56.134195Z] [nf-5b82c42ebd684f6e2d8dacea321a1400-aa446-8fl65] [590_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec