File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/8485cde9d430bc1faebd13b5c9cd1c/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-jiht4gma because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:09:21,590 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:09:22,870 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:09:23,147 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:09:24,784 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:09:25,033 - cnv_pipe.batch.run_model - INFO - Processing cluster 1265 with 162 probes
2026-06-04 17:09:25,631 - cnv_pipe.batch.run_model.cluster1265 - INFO - Child process started for cluster 1265 with 162 probes
2026-06-04 17:10:40,878 - cnv_pipe.batch.run_model.cluster1265 - INFO - Child process finished cluster 1265. Wrote cluster_1265_samples.csv and cluster_1265_params.csv
2026-06-04 17:10:40,880 - cnv_pipe.batch.run_model - INFO - Cluster 1265 finished in 75.85 seconds. Status: SUCCESS