.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/2f8e6d55c2060057f72142a748b1ff/.command.log
Size: 87.4 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/2f8e6d55c2060057f72142a748b1ff/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/2f8e6d55c2060057f72142a748b1ff/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/8eee459d74eba64dfe5bc8368d5cb4/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/8eee459d74eba64dfe5bc8368d5cb4/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:45.542274Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:45.542925Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:45.542938Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:45.542943Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:45.542947Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXkSqsDg'
[2026-06-04T17:03:45.542951Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:45.542956Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:45.542960Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:45.542963Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:03:45.542967Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:45.542971Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:45.542975Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:45.542978Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:45.542982Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:45.543457Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:45.543577Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:45.549442Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:45.550508Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:45.550731Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:45.550980Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:45.551289Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.551752Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.551847Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.551917Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.552033Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.552099Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.552216Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.552278Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.552604Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.552881Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.553070Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.553260Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.553343Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.553615Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.553970Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.554859Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.556209Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.556484Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:45.556603Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.556675Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.556954Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557084Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557412Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557478Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557587Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557647Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557791Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557861Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.557972Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.558045Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.558152Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.558218Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.558350Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.558552Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.558947Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559016Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559130Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559199Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559325Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559419Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559565Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559628Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559742Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559808Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559916Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.559977Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.560089Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.560173Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.560525Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.560914Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561020Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561088Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561196Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561261Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561371Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561431Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561538Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561603Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561725Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561793Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.561907Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.562049Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.562606Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.562672Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.562779Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.562847Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.562956Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563017Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563126Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563190Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563296Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563360Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563468Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.563529Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.564978Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.565542Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.565688Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.565762Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.565875Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.565940Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566050Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566111Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566225Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566288Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566396Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566462Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566612Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.566753Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.567492Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568087Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568205Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568273Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568417Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568480Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568607Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.568669Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.583776Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.584374Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.584518Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.584623Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.584934Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.585020Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.586226Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.586364Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.586488Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.586821Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.587422Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.587816Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.588105Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:45.588390Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.588717Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:45.589607Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.590680Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.592077Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.593259Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.598313Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:45.601954Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:45.604052Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:45.606417Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:45.606710Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:45.610700Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:45.611573Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:45.614030Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:45.878074Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.879120Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:45.882159Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:46.194209Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.195315Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.198411Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:46.259782Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.260906Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.263470Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:46.292948Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.294050Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.296824Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:46.408593Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.409673Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.412385Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:46.624489Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.625438Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.628108Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:46.940340Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.941759Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:46.945035Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:47.056554Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.056648Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.057603Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.058061Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.060962Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:03:47.061985Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:47.090381Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.091313Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.093723Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:47.155377Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.156708Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.159469Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:03:47.188801Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.189785Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.192552Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:47.304301Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.304417Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.305334Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.305655Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.308633Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:03:47.309281Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:47.337927Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.338830Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.341333Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:47.453293Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.454376Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.457014Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:47.919512Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.919610Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.920546Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.921153Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.923710Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:03:47.924593Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:03:47.953731Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.954698Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.957006Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:03:47.970567Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.971467Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.974221Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:47.987269Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.988132Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:47.990305Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:03:48.020181Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.021103Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.023279Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:03:48.028858Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.029630Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.032111Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:48.061573Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.062480Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.065340Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:48.094582Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.095756Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.098288Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:03:48.103523Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.104387Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.106739Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:48.136408Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.137282Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.139589Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:03:48.169204Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.170121Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.172942Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:03:48.202241Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.203387Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.205857Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:48.267687Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.268580Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.271208Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:03:48.300750Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.301608Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.303806Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:03:48.334615Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.335399Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.338344Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:48.550215Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.551088Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.553842Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:03:48.558938Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.559647Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.562393Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:48.591703Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.591800Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.592504Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.592763Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.595560Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:03:48.596907Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:48.656672Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.657482Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.660301Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:48.689826Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.690633Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.693305Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:03:48.722862Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.723657Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.726069Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:03:48.755793Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.756536Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.759133Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:48.921163Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.922065Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.924667Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:03:48.954211Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.954993Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.957466Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:03:48.986914Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.987694Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:48.990487Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:49.202946Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.203785Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.206415Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:03:49.235760Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.236541Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.239694Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:49.401397Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.402293Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.405134Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:03:49.418120Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.418844Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.421252Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:03:49.434614Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.435320Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.437700Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:49.467199Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.467268Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.467936Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.468174Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.470835Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:49.471930Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:49.833359Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.834211Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.837117Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:49.998718Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:49.999479Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.001942Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:03:50.064905Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.064983Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.065016Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.065650Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.065936Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.066395Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.069082Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:03:50.070094Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:03:50.071192Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:03:50.099209Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.099285Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.099309Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.099889Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.100225Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.100526Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.104055Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:03:50.104325Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:03:50.105183Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:50.165763Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.165831Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.165853Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.166410Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.166702Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.166939Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.170876Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:50.172059Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:50.173122Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:50.331981Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.332075Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.332733Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.333041Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.335581Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:03:50.336678Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:03:50.397473Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.397556Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.398191Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.398600Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.401556Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:50.402513Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:50.414910Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.415485Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.417767Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:03:50.447540Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.448134Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.450478Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:50.562139Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.562222Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.562762Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.563046Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.565755Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:03:50.566801Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:50.595009Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.595598Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.598302Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:03:50.627592Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.627654Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.628173Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.628470Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.631044Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:03:50.631836Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:50.661519Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.662083Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.664507Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:03:50.694045Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.694610Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.697221Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:50.758779Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.759404Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.762351Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:03:50.823612Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.824334Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.826804Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:03:50.856455Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.857045Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.859393Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:03:50.889252Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.889858Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:50.892607Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:51.004274Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.004927Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.007636Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:03:51.037048Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.037630Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.040130Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:03:51.101858Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.117993Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.118077Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.118551Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.118843Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.121472Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:03:51.122315Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:03:51.136016Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.136516Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.138765Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:03:51.200437Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.200522Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.200550Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.465001Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.465521Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.467794Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:03:51.497439Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.662011Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.662507Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.664718Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:03:51.694667Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.758706Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.759159Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:51.761334Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:03:51.791081Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.055531Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.056014Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.058224Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:03:52.087933Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.088208Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.088334Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.088613Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.088921Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.093222Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:52.095093Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:52.117583Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:52.121095Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.121157Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.121179Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.121373Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.121728Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.124327Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:52.125080Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:52.153815Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.153892Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.154074Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:52.156415Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:52.186079Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:56.160005Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:04:04.431250Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:04:04.431250Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] 
[2026-06-04T17:04:04.431250Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:04:04.431334Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] 
[2026-06-04T17:04:04.431342Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:04:04.431348Z] [nf-fd2f8e6d55c2060057f72142a748b1ff-50927-xztvw] [578_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec