File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/fa1aa8e0fe884f7ca351f218008c6e/.command.log
Size
63.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/fa1aa8e0fe884f7ca351f218008c6e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/fa1aa8e0fe884f7ca351f218008c6e/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwetD5d/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwetD5d/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXwetD5d/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:03:29.320795Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:29.321346Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:29.321358Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:29.321362Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:29.321366Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXwetD5d'
[2026-06-04T17:03:29.321370Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:29.321374Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:29.321378Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:29.321382Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:03:29.321385Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:29.321389Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:29.321393Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:29.321396Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:29.321400Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:29.321988Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:29.322116Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:29.328212Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:29.329132Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:29.329378Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:29.329695Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:29.330074Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.330501Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.330598Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.330672Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.330794Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.330863Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.330986Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.331051Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.331355Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.331642Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.331776Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.332099Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.332692Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.333303Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.335011Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.335233Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.335421Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:29.335602Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336010Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336087Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336284Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336356Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336469Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336538Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336649Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336712Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336829Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.336895Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337006Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337140Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337526Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337626Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337749Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337810Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337925Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.337991Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338101Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338164Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338272Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338338Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338445Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338523Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.338981Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.339312Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.340437Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.340709Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.340834Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.340961Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341080Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341149Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341259Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341325Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341436Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341502Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341616Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341678Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.341890Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342326Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342434Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342499Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342609Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342669Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342777Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342841Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.342947Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.343014Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358095Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358202Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358277Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358432Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358504Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358589Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358655Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.358762Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.360110Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:29.361109Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:29.361283Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.362050Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.362743Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.363728Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.364924Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.365763Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.367939Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.369049Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:29.369577Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.371422Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.373169Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:29.379528Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:29.383019Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:29.383491Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:29.385736Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:29.388231Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:29.391282Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:29.439426Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.440795Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.446254Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:29.457290Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.458111Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:29.461300Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:30.425425Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.426465Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.429425Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:30.691103Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.692009Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.695158Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:30.724276Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.725255Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.727490Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.727777Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.728141Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:30.728697Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.728975Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.732655Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:03:30.733547Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:30.740730Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.741392Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.743884Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:03:30.745012Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.745588Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.747840Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:03:30.761257Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.761924Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.764426Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:30.777817Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.777893Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.778495Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.778790Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.781541Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:03:30.782146Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:03:30.786546Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.787206Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.789667Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:30.819147Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.819232Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.819914Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.820216Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.823180Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:03:30.824091Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:30.852544Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.853196Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.855773Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:03:30.885082Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.885776Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.888669Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:03:30.917995Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.918676Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.921600Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:03:30.950830Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.951527Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:30.954475Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:31.066173Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:31.066923Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:31.069756Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:03:31.099030Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:31.099703Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:31.102607Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:31.665645Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:31.666374Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:31.669326Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:32.031378Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.032271Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.035170Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:32.146765Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.146857Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.147528Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.147874Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.150805Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:03:32.151653Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:32.212433Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.213138Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.215899Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:32.216732Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.217207Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.219704Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:32.331409Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.332105Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.334972Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:03:32.396431Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.396528Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.397143Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.397494Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.400612Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:03:32.401513Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:32.429675Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.430332Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.432843Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:32.594842Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.595557Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.597954Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:03:32.659767Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.660527Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.663079Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:03:32.724739Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.725396Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.728567Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:32.789613Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.789715Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.790370Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.790808Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.794002Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:03:32.795145Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:32.823092Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.823741Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.826300Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:32.938065Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.938772Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.941803Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:03:32.970847Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.971475Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.974449Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:03:33.036063Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.036693Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.039477Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:03:33.100881Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.101506Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.104200Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:03:33.109460Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.110006Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.112898Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:03:33.142384Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.142469Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.142493Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.142987Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.143338Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.144246Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.147673Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:03:33.149206Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:33.150376Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:33.178430Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.178973Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.181852Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:03:33.211237Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.211795Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.214520Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:03:33.243881Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.244410Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.247311Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:33.260538Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.261052Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.263615Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:33.325230Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.325785Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.328391Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:03:33.390044Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.654966Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.655499Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.658564Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:03:33.687757Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.852230Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.852743Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.855220Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:03:33.916969Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.917071Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.917516Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.920045Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:03:33.981554Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.013732Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.014185Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.016673Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:03:34.046061Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.310777Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.311236Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.313741Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:03:34.343061Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.608154Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.608628Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.611163Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:03:34.640737Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.556871Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.557355Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.560460Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:03:35.621673Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.621947Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.622100Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.622575Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.622851Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.626553Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:35.628061Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:35.629181Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:35.655725Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.655802Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.655825Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.656036Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.656316Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.658543Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:35.659403Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:35.688879Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.688952Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.689134Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.691509Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:35.720981Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:39.946088Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:48.209591Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:48.209591Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] 
[2026-06-04T17:03:48.209591Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:48.209658Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] 
[2026-06-04T17:03:48.209664Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:48.209670Z] [nf-17fa1aa8e0fe884f7ca351f218008c6e-67f82-6n8mp] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec