Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/c4ab45bb4b14cde4d7fe20c44b7e3d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/325d3e9b29b733250425253fa97fc7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/c4ab45bb4b14cde4d7fe20c44b7e3d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:03:32.246544Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:03:32.248310Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:03:32.248330Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:03:32.248335Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:03:32.248340Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXfM0QV3'
[2026-06-04T17:03:32.248344Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:03:32.248350Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:03:32.248353Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:03:32.248357Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:03:32.248361Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:03:32.248364Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:03:32.248368Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:03:32.248371Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:03:32.248375Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:03:32.248937Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:03:32.249064Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:03:32.255275Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:03:32.255851Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:03:32.256140Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:03:32.256523Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:03:32.256840Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257272Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257382Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257457Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257582Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257649Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257769Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.257830Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.258200Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.258311Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.258417Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.258562Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.258830Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.259276Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.259411Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.261238Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.261476Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.261889Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.261963Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:03:32.262074Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262274Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262341Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262454Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262520Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262630Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262690Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.262853Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263128Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263240Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263307Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263421Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263486Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263602Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263666Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263778Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263840Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.263952Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.264016Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.264127Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.264252Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.264416Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.264865Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.265418Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.265517Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.265961Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266024Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266136Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266202Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266368Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266435Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266560Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.266839Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267188Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267250Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267380Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267442Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267557Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267623Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267733Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267797Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267930Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.267990Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.268099Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.268189Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.268733Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.268799Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.268907Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.268967Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.282929Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.283436Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.283508Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.283670Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.283738Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.283823Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.283892Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.285299Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.285920Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:03:32.285973Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:03:32.288990Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.289595Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.289902Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.290314Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.292257Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.292713Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.292792Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:32.294573Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.294953Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:32.295259Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.297999Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:32.301638Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:32.303064Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.303633Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:32.304351Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:32.307111Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:32.308308Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:32.418092Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.418885Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.422465Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:32.984523Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.985364Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:32.988291Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:33.049744Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.050608Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.053615Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:33.165008Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.165823Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.168603Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:03:33.230092Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.230877Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.233959Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:33.445721Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.446559Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.449673Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:33.560991Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.561808Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.564839Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:33.826679Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.827455Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.830540Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:03:33.859614Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.860354Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.862903Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:33.892403Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.893085Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.895495Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:33.958105Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.958803Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:33.961843Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:03:34.023083Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.023778Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.026805Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:34.138605Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.139337Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.142466Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:34.253731Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.254481Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.257475Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:03:34.318394Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.319114Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.321875Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:03:34.335049Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.335737Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.338505Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:03:34.351642Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.351722Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.352657Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.352996Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.356430Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:03:34.357771Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:34.385446Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.386063Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.388803Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:03:34.389932Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.390637Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.393362Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:34.422746Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.423468Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.426434Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:34.888978Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.889048Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.889085Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.889778Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.890132Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.890566Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.893499Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:03:34.896172Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:34.897419Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:34.923324Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.923951Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.926311Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:03:34.955580Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.955625Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.956119Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.956469Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.958966Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:03:34.959752Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:03:34.964165Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.964706Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.967204Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:03:34.996697Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.996788Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.996814Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.997377Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.999249Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:34.999551Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.000073Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:03:35.002720Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:03:35.003980Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:35.031752Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.031804Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.032362Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.032614Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.035675Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:35.037135Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:35.297145Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.297834Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.300965Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:03:35.330251Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.331259Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.331926Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.333947Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.334684Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:35.337528Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:35.398441Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.399047Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.401368Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:03:35.430704Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.431246Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.434111Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:35.645636Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.646274Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.649201Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:35.810940Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.811508Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.814439Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:03:35.843876Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.844433Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.847241Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:03:35.908471Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.908976Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.911993Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:03:35.941312Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.941813Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:35.944985Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:36.507688Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.508335Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.511417Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:03:36.572948Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.573024Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.573054Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.573568Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.574072Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.574795Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.578051Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:03:36.578735Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:03:36.579082Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:03:36.610387Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.610481Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.610516Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.611000Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.612564Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.614207Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.614580Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:03:36.614740Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:36.617909Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:36.647741Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.648271Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.650837Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:36.664636Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.665199Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:03:36.668004Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:03:36.729514Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.044636Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.045133Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.048047Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:03:37.109715Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.174364Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.174865Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.177982Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:03:37.207114Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.239265Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.239723Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.242213Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:03:37.304187Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.336235Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.336704Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.339146Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:03:37.369927Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.369999Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.370464Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.372923Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:03:37.402566Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.566976Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.567454Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:03:37.570062Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:03:37.599325Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.465228Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.465708Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.468509Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:03:38.530955Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.531244Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.531389Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.533093Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.533797Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:03:38.535266Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.535588Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:03:38.537913Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:03:38.568296Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.568365Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.568390Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.568603Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.569179Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.571054Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:03:38.573564Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:03:38.602926Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.602987Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.603206Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:03:38.605773Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:03:38.635236Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:03:42.857394Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:03:51.136705Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:03:51.136705Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] 
[2026-06-04T17:03:51.136705Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:03:51.136808Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] 
[2026-06-04T17:03:51.136818Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:03:51.136827Z] [nf-3fc4ab45bb4b14cde4d7fe20c44b7e3d-0a108-4zd69] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec