sample_id,mosdepth_mean_coverage,mosdepth_mean_coverage_target,samtools_raw_total_sequences,samtools_reads_mapped,samtools_reads_unmapped,samtools_reads_properly_paired,samtools_reads_duplicated,samtools_reads_mq0,samtools_bases_mapped_cigar,samtools_mismatches,samtools_error_rate,samtools_average_length,samtools_average_quality,samtools_insert_size_average,samtools_insert_size_std_dev,samtools_properly_paired_percent,samtools_duplication_rate,samtools_mapping_rate,sentieon_insert_size_median_insert_size,sentieon_insert_size_mean_insert_size,sentieon_hotspot_depth_mean_target_coverage,sentieon_hotspot_depth_pct_selected_bases,sentieon_hotspot_depth_zero_cvg_targets_pct,sentieon_hotspot_depth_pct_target_bases_10x,sentieon_hotspot_depth_pct_target_bases_20x,sentieon_hotspot_depth_pct_target_bases_30x,sentieon_hotspot_depth_at_dropout,sentieon_hotspot_depth_gc_dropout,sentieon_coding_depth_mean_target_coverage,sentieon_coding_depth_pct_selected_bases,sentieon_coding_depth_zero_cvg_targets_pct,sentieon_coding_depth_pct_target_bases_10x,sentieon_coding_depth_pct_target_bases_20x,sentieon_coding_depth_pct_target_bases_30x,sentieon_coding_depth_at_dropout,sentieon_coding_depth_gc_dropout,sentieon_noncoding_depth_mean_target_coverage,sentieon_noncoding_depth_pct_selected_bases,sentieon_noncoding_depth_zero_cvg_targets_pct,sentieon_noncoding_depth_pct_target_bases_10x,sentieon_noncoding_depth_pct_target_bases_20x,sentieon_noncoding_depth_pct_target_bases_30x,sentieon_noncoding_depth_at_dropout,sentieon_noncoding_depth_gc_dropout,sentieon_boosted_depth_mean_target_coverage,sentieon_boosted_depth_pct_selected_bases,sentieon_boosted_depth_zero_cvg_targets_pct,sentieon_boosted_depth_pct_target_bases_10x,sentieon_boosted_depth_pct_target_bases_20x,sentieon_boosted_depth_pct_target_bases_30x,sentieon_boosted_depth_at_dropout,sentieon_boosted_depth_gc_dropout,sentieon_non_boosted_depth_mean_target_coverage,sentieon_non_boosted_depth_pct_selected_bases,sentieon_non_boosted_depth_zero_cvg_targets_pct,sentieon_non_boosted_depth_pct_target_bases_10x,sentieon_non_boosted_depth_pct_target_bases_20x,sentieon_non_boosted_depth_pct_target_bases_30x,sentieon_non_boosted_depth_at_dropout,sentieon_non_boosted_depth_gc_dropout,sentieon_foresight_depth_mean_target_coverage,sentieon_foresight_depth_pct_selected_bases,sentieon_foresight_depth_zero_cvg_targets_pct,sentieon_foresight_depth_pct_target_bases_10x,sentieon_foresight_depth_pct_target_bases_20x,sentieon_foresight_depth_pct_target_bases_30x,sentieon_foresight_depth_at_dropout,sentieon_foresight_depth_gc_dropout,sentieon_all_targets_mean_target_coverage,sentieon_all_targets_pct_selected_bases,sentieon_all_targets_zero_cvg_targets_pct,sentieon_all_targets_pct_target_bases_10x,sentieon_all_targets_pct_target_bases_20x,sentieon_all_targets_pct_target_bases_30x,sentieon_all_targets_at_dropout,sentieon_all_targets_gc_dropout,sentieon_all_probes_mean_target_coverage,sentieon_all_probes_pct_selected_bases,sentieon_all_probes_zero_cvg_targets_pct,sentieon_all_probes_pct_target_bases_10x,sentieon_all_probes_pct_target_bases_20x,sentieon_all_probes_pct_target_bases_30x,sentieon_all_probes_at_dropout,sentieon_all_probes_gc_dropout,seqtool_hotspot_depth_frac_reads_on_target,seqtool_hotspot_depth_frac_pairs_on_target,seqtool_hotspot_depth_frag_size_median,seqtool_hotspot_depth_frag_size_mean,seqtool_hotspot_depth_frag_size_std,seqtool_hotspot_depth_min_depth,seqtool_hotspot_depth_mean_depth,seqtool_hotspot_depth_cv_depth,seqtool_hotspot_depth_max_depth,seqtool_hotspot_depth_q5_depth,seqtool_hotspot_depth_q50_depth,seqtool_hotspot_depth_frac_bases_gt30x,seqtool_hotspot_depth_frac_bases_gt100x,seqtool_hotspot_depth_contam,seqtool_hotspot_depth_saturation_at_1000000_reads,seqtool_coding_depth_frac_reads_on_target,seqtool_coding_depth_frac_pairs_on_target,seqtool_coding_depth_frag_size_median,seqtool_coding_depth_frag_size_mean,seqtool_coding_depth_frag_size_std,seqtool_coding_depth_min_depth,seqtool_coding_depth_mean_depth,seqtool_coding_depth_cv_depth,seqtool_coding_depth_max_depth,seqtool_coding_depth_q5_depth,seqtool_coding_depth_q50_depth,seqtool_coding_depth_frac_bases_gt30x,seqtool_coding_depth_frac_bases_gt100x,seqtool_coding_depth_contam,seqtool_coding_depth_saturation_at_1000000_reads,seqtool_coding_depth_gc_bias_mae,seqtool_coding_depth_gc_bias_low,seqtool_coding_depth_gc_bias_high,seqtool_coding_depth_gc_bias_ratio,seqtool_noncoding_depth_frac_reads_on_target,seqtool_noncoding_depth_frac_pairs_on_target,seqtool_noncoding_depth_frag_size_median,seqtool_noncoding_depth_frag_size_mean,seqtool_noncoding_depth_frag_size_std,seqtool_noncoding_depth_min_depth,seqtool_noncoding_depth_mean_depth,seqtool_noncoding_depth_cv_depth,seqtool_noncoding_depth_max_depth,seqtool_noncoding_depth_q5_depth,seqtool_noncoding_depth_q50_depth,seqtool_noncoding_depth_frac_bases_gt30x,seqtool_noncoding_depth_frac_bases_gt100x,seqtool_noncoding_depth_contam,seqtool_noncoding_depth_saturation_at_1000000_reads,seqtool_noncoding_depth_gc_bias_mae,seqtool_noncoding_depth_gc_bias_low,seqtool_noncoding_depth_gc_bias_high,seqtool_noncoding_depth_gc_bias_ratio,seqtool_boosted_depth_frac_reads_on_target,seqtool_boosted_depth_frac_pairs_on_target,seqtool_boosted_depth_frag_size_median,seqtool_boosted_depth_frag_size_mean,seqtool_boosted_depth_frag_size_std,seqtool_boosted_depth_min_depth,seqtool_boosted_depth_mean_depth,seqtool_boosted_depth_cv_depth,seqtool_boosted_depth_max_depth,seqtool_boosted_depth_q5_depth,seqtool_boosted_depth_q50_depth,seqtool_boosted_depth_frac_bases_gt30x,seqtool_boosted_depth_frac_bases_gt100x,seqtool_boosted_depth_contam,seqtool_boosted_depth_saturation_at_1000000_reads,seqtool_boosted_depth_gc_bias_mae,seqtool_boosted_depth_gc_bias_low,seqtool_boosted_depth_gc_bias_high,seqtool_boosted_depth_gc_bias_ratio,seqtool_non_boosted_depth_frac_reads_on_target,seqtool_non_boosted_depth_frac_pairs_on_target,seqtool_non_boosted_depth_frag_size_median,seqtool_non_boosted_depth_frag_size_mean,seqtool_non_boosted_depth_frag_size_std,seqtool_non_boosted_depth_min_depth,seqtool_non_boosted_depth_mean_depth,seqtool_non_boosted_depth_cv_depth,seqtool_non_boosted_depth_max_depth,seqtool_non_boosted_depth_q5_depth,seqtool_non_boosted_depth_q50_depth,seqtool_non_boosted_depth_frac_bases_gt30x,seqtool_non_boosted_depth_frac_bases_gt100x,seqtool_non_boosted_depth_contam,seqtool_non_boosted_depth_saturation_at_1000000_reads,seqtool_non_boosted_depth_gc_bias_mae,seqtool_non_boosted_depth_gc_bias_low,seqtool_non_boosted_depth_gc_bias_high,seqtool_non_boosted_depth_gc_bias_ratio,seqtool_foresight_depth_frac_reads_on_target,seqtool_foresight_depth_frac_pairs_on_target,seqtool_foresight_depth_frag_size_median,seqtool_foresight_depth_frag_size_mean,seqtool_foresight_depth_frag_size_std,seqtool_foresight_depth_min_depth,seqtool_foresight_depth_mean_depth,seqtool_foresight_depth_cv_depth,seqtool_foresight_depth_max_depth,seqtool_foresight_depth_q5_depth,seqtool_foresight_depth_q50_depth,seqtool_foresight_depth_frac_bases_gt30x,seqtool_foresight_depth_frac_bases_gt100x,seqtool_foresight_depth_contam,seqtool_foresight_depth_saturation_at_1000000_reads,seqtool_foresight_depth_gc_bias_mae,seqtool_foresight_depth_gc_bias_low,seqtool_foresight_depth_gc_bias_high,seqtool_foresight_depth_gc_bias_ratio,seqtool_all_targets_frac_reads_on_target,seqtool_all_targets_frac_pairs_on_target,seqtool_all_targets_frag_size_median,seqtool_all_targets_frag_size_mean,seqtool_all_targets_frag_size_std,seqtool_all_targets_min_depth,seqtool_all_targets_mean_depth,seqtool_all_targets_cv_depth,seqtool_all_targets_max_depth,seqtool_all_targets_q5_depth,seqtool_all_targets_q50_depth,seqtool_all_targets_frac_bases_gt30x,seqtool_all_targets_frac_bases_gt100x,seqtool_all_targets_contam,seqtool_all_targets_saturation_at_1000000_reads,seqtool_all_targets_gc_bias_mae,seqtool_all_targets_gc_bias_low,seqtool_all_targets_gc_bias_high,seqtool_all_targets_gc_bias_ratio,seqtool_all_probes_frac_reads_on_target,seqtool_all_probes_frac_pairs_on_target,seqtool_all_probes_frag_size_median,seqtool_all_probes_frag_size_mean,seqtool_all_probes_frag_size_std,seqtool_all_probes_min_depth,seqtool_all_probes_mean_depth,seqtool_all_probes_cv_depth,seqtool_all_probes_max_depth,seqtool_all_probes_q5_depth,seqtool_all_probes_q50_depth,seqtool_all_probes_frac_bases_gt30x,seqtool_all_probes_frac_bases_gt100x,seqtool_all_probes_contam,seqtool_all_probes_saturation_at_1000000_reads,seqtool_all_probes_gc_bias_mae,seqtool_all_probes_gc_bias_low,seqtool_all_probes_gc_bias_high,seqtool_all_probes_gc_bias_ratio
HCC1395_BL,0.03,1.35,999992,999983,9,999292,146553,129468,144029228,614526,0.004266676,144.0,38.9,304.8,148.7,99.9,0.14655417243337945,0.9999909999279994,275,301.72527,0.0,0.777421,1.0,0.0,0.0,0.0,0.0,0.0,0.873883,0.777421,0.995655,0.00308548,0.00308548,0.00308548,37.322,22.308,6.18819,0.777421,0.993766,0.0127569,0.0127121,0.0126975,53.8859,14.9069,4.49156,0.777421,0.994302,0.00966925,0.00963876,0.0096288,46.5416,19.3933,0.83452,0.777421,0.990102,0.00976176,0.00971191,0.00958401,10.459,5.36945,0.611165,0.777421,0.988625,0.00696598,0.0068551,0.00664833,40.6509,28.8673,1.32444,0.777421,0.990202,0.00972054,0.00967173,0.00955708,16.4787,12.4848,1.17401,0.777421,0.990252,0.00980531,0.00969251,0.00934613,20.487,10.0409,0.0,0.0,275.0,301.595461,123.55658,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,31.0,0.030424,0.042904,275.0,301.595461,123.55658,0.0,0.879222,1.995704,582.0,0.0,0.0,0.003893,0.003373,0.0,31.0,1.1857425454545454,0.0704068,2.1941016666666666,0.002942331204755775,0.237115,0.248213,275.0,301.595461,123.55658,0.0,5.741505,1.963404,744.0,0.0,0.0,0.01444,0.013785,0.0,31.0,0.9694863636363635,0.4690562,1.102307,0.02062572049867201,0.252801,0.263975,275.0,301.595461,123.55658,0.0,4.188256,1.942377,744.0,0.0,0.0,0.011071,0.010459,0.0,31.0,0.8147175454545454,0.1027012,0.8331733333333333,0.006402561403243031,0.424765,0.519157,275.0,301.595461,123.55658,0.0,0.712114,1.717744,412.0,0.0,0.0,0.009799,0.001376,0.0,31.0,0.35874599999999995,0.5043894,1.3692595,0.7768160245659063,0.007957,0.009671,275.0,301.595461,123.55658,0.0,0.705061,1.987368,257.0,0.0,0.0,0.007269,0.002275,0.0,31.0,0.8502152727272727,0.189811,1.3193543333333333,0.743582268899425,0.672452,0.772698,275.0,301.595461,123.55658,0.0,1.179182,1.736714,744.0,0.0,0.0,0.009939,0.0026,0.0,31.0,0.35817618181818184,0.3204236,1.0567951666666666,0.4441745910026099,0.695524,0.775208,275.0,301.595461,123.55658,0.0,1.046143,1.678139,744.0,0.0,0.0,0.009497,0.00216,0.0,31.0,0.35609945454545455,0.42917000000000005,0.9477595,0.564517690362007
HCC1395_tumor,0.03,1.27,999980,999976,4,998864,169120,130024,143510476,699130,0.00487163,144.0,38.9,296.6,145.3,99.9,0.16912338246764935,0.9999959999199984,265,292.071073,0.0,0.773814,1.0,0.0,0.0,0.0,0.0,0.0,0.698404,0.773814,0.995231,0.00308548,0.00308548,0.00307018,36.5984,21.9637,5.45997,0.773814,0.993574,0.0127564,0.0127104,0.0126823,53.4103,14.9579,3.93981,0.773814,0.994077,0.00966886,0.00963759,0.00961355,46.0726,19.5883,0.843406,0.773814,0.990107,0.00975451,0.009658,0.00944918,10.8043,4.80992,0.522356,0.773814,0.988625,0.00698396,0.00660637,0.00622279,40.7917,29.5779,1.25712,0.773814,0.990192,0.00971458,0.00962097,0.00943303,15.7673,10.8893,1.12248,0.773814,0.990245,0.00978973,0.00960264,0.00919073,19.7867,8.30093,0.0,0.0,265.0,291.923995,119.878181,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,22.0,0.026551,0.03713,265.0,291.923995,119.878181,0.0,0.728002,2.005771,508.0,0.0,0.0,0.003892,0.002984,0.0,22.0,1.204762181818182,0.08127039999999999,2.2583365,0.005553820499665527,0.218128,0.227585,265.0,291.923995,119.878181,0.0,5.076311,1.946193,622.0,0.0,0.0,0.014491,0.013702,0.0,22.0,0.9678070909090909,0.43608159999999996,1.1109391666666666,0.019781256844446926,0.230929,0.240205,265.0,291.923995,119.878181,0.0,3.687251,2.011725,622.0,0.0,0.0,0.011105,0.010279,0.0,22.0,0.8075224545454546,0.1151022,0.8421403333333334,0.004588874144762227,0.445619,0.539071,265.0,291.923995,119.878181,0.0,0.718654,1.711118,376.0,0.0,0.0,0.009642,0.001608,0.0,22.0,0.4005874545454546,0.46470700000000004,1.4002976666666667,0.7345906772734074,0.007187,0.00871,265.0,291.923995,119.878181,0.0,0.615946,1.986219,241.0,0.0,0.0,0.006712,0.001489,0.0,22.0,0.8531469090909091,0.181196,1.3210856666666666,0.6627888087414251,0.67209,0.770536,265.0,291.923995,119.878181,0.0,1.116645,1.777627,622.0,0.0,0.0,0.009802,0.002771,0.0,22.0,0.34322345454545455,0.3195652,1.0908101666666667,0.435355516016543,0.695869,0.773538,265.0,291.923995,119.878181,0.0,0.997416,1.358546,622.0,0.0,0.0,0.009349,0.002338,0.0,22.0,0.33228463636363637,0.42950299999999997,0.9709880000000001,0.5542473939581553
Sig_18_Blood,0.03,1.45,999982,999975,7,999480,115575,123440,144627827,649292,0.004489399,145.0,38.9,312.7,151.8,99.9,0.11557708038744698,0.9999929998739977,280,307.472641,0.0,0.784477,1.0,0.0,0.0,0.0,0.0,0.0,0.915509,0.784477,0.995443,0.00321527,0.00313017,0.00311426,37.2112,21.5116,7.09592,0.784477,0.993383,0.0132399,0.0131342,0.0130552,53.976,14.9504,5.12278,0.784477,0.994077,0.0100394,0.00994034,0.00988151,46.7068,19.5302,0.846148,0.784477,0.989979,0.0097916,0.00972018,0.00961445,9.15578,5.78684,0.573986,0.784477,0.988625,0.00697947,0.00667979,0.00643406,40.4455,29.2768,1.41939,0.784477,0.990058,0.0097963,0.00971643,0.00961382,16.1767,14.118,1.25552,0.784477,0.99013,0.00988723,0.00976112,0.00945576,20.0992,12.029,0.0,0.0,280.0,307.417657,125.665527,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,27.0,0.030647,0.044265,280.0,307.417657,125.665527,0.0,0.902486,1.981796,586.0,0.0,0.0,0.003835,0.003405,0.0,27.0,1.1127487272727272,0.078514,2.083718333333333,0.012995241826873685,0.257706,0.269489,280.0,307.417657,125.665527,0.0,6.517132,1.99418,806.0,0.0,0.0,0.01456,0.014116,0.0,27.0,0.9520144545454545,0.48518019999999995,1.0816221666666666,0.021396313662784414,0.273051,0.284774,280.0,307.417657,125.665527,0.0,4.723542,1.942057,806.0,0.0,0.0,0.011134,0.010694,0.0,27.0,0.8184688181818182,0.1057968,0.8187665000000001,0.007868670402711258,0.413797,0.509401,280.0,307.417657,125.665527,0.0,0.723479,1.70641,422.0,0.0,0.0,0.009914,0.001434,0.0,27.0,0.30123545454545453,0.5475152,1.2997915,0.8896864478456759,0.007347,0.009057,280.0,307.417657,125.665527,0.0,0.666941,1.98342,266.0,0.0,0.0,0.007062,0.001774,0.0,27.0,0.8436132727272727,0.1837324,1.2919105,0.7921682306770069,0.681791,0.783822,280.0,307.417657,125.665527,0.0,1.261013,1.689229,806.0,0.0,0.0,0.010043,0.002682,0.0,27.0,0.35040327272727273,0.34580219999999995,1.0101778333333333,0.4833793927990435,0.704681,0.786191,280.0,307.417657,125.665527,0.0,1.116617,1.635608,806.0,0.0,0.0,0.009656,0.002236,0.0,27.0,0.3527551818181818,0.4740154,0.918126,0.6198030152776968
Sig_18_tissue,0.03,1.45,999980,999972,8,998956,84376,118922,141233489,719956,0.00509763,142.0,39.1,244.5,117.4,99.9,0.08437768755375108,0.9999919998399968,218,241.995101,0.0,0.810994,1.0,0.0,0.0,0.0,0.0,0.0,1.05221,0.810994,0.995231,0.00320241,0.00306773,0.003061,37.8895,21.4249,7.00156,0.810994,0.992999,0.0130432,0.012955,0.0128678,53.212,14.8298,5.10219,0.810994,0.993627,0.00990145,0.00979845,0.00973688,46.5452,19.083,0.966277,0.810994,0.989984,0.00974931,0.00969906,0.00954547,9.88838,5.62863,0.53582,0.810994,0.98912,0.00688507,0.00646403,0.00610142,41.4845,28.6591,1.5194,0.810994,0.990039,0.00973979,0.0096774,0.00953145,16.0088,12.9104,1.34833,0.810994,0.99013,0.00982312,0.00967753,0.0093349,20.1829,10.9407,0.0,0.0,218.0,241.867831,94.874466,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,36.0,0.034384,0.043198,218.0,241.867831,94.874466,0.0,1.03117,1.97026,693.0,0.0,0.0,0.003842,0.003574,0.0,36.0,1.0305081818181818,0.0718778,1.9561171666666668,0.013131859287723471,0.258294,0.266334,218.0,241.867831,94.874466,0.0,6.371626,1.957437,843.0,0.0,0.0,0.014554,0.014151,0.0,36.0,0.9499222727272727,0.4822058,1.0125951666666666,0.020609028741837624,0.276479,0.284204,218.0,241.867831,94.874466,0.0,4.665626,1.952069,843.0,0.0,0.0,0.011132,0.010772,0.0,36.0,0.8208596363636363,0.11167679999999999,0.7712463333333334,0.010112587837394103,0.467734,0.529275,218.0,241.867831,94.874466,0.0,0.805977,1.634082,357.0,0.0,0.0,0.009737,0.002489,0.0,36.0,0.2860910909090909,0.46839820000000004,1.2239436666666668,0.6969100292527867,0.007739,0.008725,218.0,241.867831,94.874466,0.0,0.68359,1.987347,343.0,0.0,0.0,0.006771,0.001753,0.0,36.0,0.8351928181818181,0.1678402,1.2622161666666667,0.6362426246423203,0.73813,0.803331,218.0,241.867831,94.874466,0.0,1.323868,1.656403,843.0,0.0,0.0,0.009886,0.003597,0.0,36.0,0.3827044545454546,0.3160078,0.9551683333333333,0.4107619911842601,0.757759,0.8063,218.0,241.867831,94.874466,0.0,1.174775,1.604051,843.0,0.0,0.0,0.009514,0.00299,0.0,36.0,0.4341488181818182,0.43715840000000006,0.8745094999999999,0.5928870163264042