File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/a26ed25e4e95ee035040995ed090d9/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-06-04T17:08:53.493096Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:53.494183Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:53.494205Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:53.494212Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:53.494217Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX75mZIm'
[2026-06-04T17:08:53.494221Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:53.494226Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:53.494231Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:53.494255Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:08:53.494261Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:53.494265Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:53.494271Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:53.494275Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:53.494279Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:53.494796Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:53.494901Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:53.500661Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:53.501236Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:53.501526Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:53.501842Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:53.502125Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.503015Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.503113Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.503245Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.503637Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.503917Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.504054Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.504588Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.505102Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.506630Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.507033Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.507327Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:53.507762Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.507982Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508105Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508172Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508287Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508354Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508469Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508535Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508716Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508783Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508894Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.508980Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.509305Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.509589Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.509714Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.509777Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.509891Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.509958Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510081Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510168Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510285Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510348Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510461Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510531Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510646Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.510710Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.511488Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.511796Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.511951Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512020Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512140Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512207Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512318Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512383Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512514Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512651Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.512820Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.513050Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.513568Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.513652Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.513762Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.513826Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.513936Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514000Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514131Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514197Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514305Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514370Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514483Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514599Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.514844Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515391Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515508Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515598Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515740Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515805Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515916Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.515982Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.516097Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.516162Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.516268Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.516335Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.534163Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.534477Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.534648Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.534904Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.535023Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.535155Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.535951Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.536077Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.536280Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.536561Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.537133Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.537496Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.537715Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:53.537794Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:53.538926Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.540073Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.540750Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.542466Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.550885Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.551716Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:08:53.554391Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:08:53.558073Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:08:53.560984Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:08:53.564272Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:08:53.567483Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:08:53.570172Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:08:53.632948Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.633016Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.633733Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.634094Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.638788Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:08:53.640087Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:08:53.698992Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.699779Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.705435Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:08:54.466088Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.466977Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.470206Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:08:54.483338Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.484060Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.487145Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:08:54.548616Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.549369Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.552110Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:08:54.613502Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.614237Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.617459Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:08:54.624195Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:08:54.630482Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.631186Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.634001Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:08:54.695284Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.696065Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.699692Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:08:54.860740Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.861597Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.865486Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:08:54.976262Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.977088Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.980408Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:08:55.041585Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.042440Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.045753Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:08:55.156985Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.157827Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.160926Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:08:55.222244Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.223037Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.226100Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:08:55.437909Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.438777Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.442012Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:08:55.503262Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.504072Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.507012Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:08:55.568207Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.568294Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.569009Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.569446Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.572874Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:08:55.574013Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:08:55.634511Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.635279Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.638347Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:08:55.800140Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.800905Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.804614Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:08:55.865232Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.866052Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.870092Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:08:55.931074Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.931832Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.934952Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:08:55.996171Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.996949Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.000310Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:08:56.061527Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.061612Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.062323Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.062772Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.066433Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:08:56.067924Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:08:56.127535Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.128279Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.132145Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:08:56.393401Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.394315Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.397887Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:08:56.458646Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.459438Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.463603Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:08:56.975332Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.976082Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.979876Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:08:57.040650Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.041406Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.045322Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:08:57.057786Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.058461Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.061751Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:08:57.122645Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.122748Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.123500Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.123845Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.127278Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:08:57.128623Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:08:57.188276Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.188382Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.189001Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.189505Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.194019Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:08:57.194616Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:08:57.253719Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.254431Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.257842Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:08:57.419316Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.420289Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.423894Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:08:57.484929Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.485615Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.489677Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:08:57.550190Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.550885Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.553904Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:08:57.615117Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.615766Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.619396Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:08:57.680197Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.680836Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.684100Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:08:57.745099Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.745721Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.748791Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:08:57.778017Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.778639Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.781676Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:08:57.842683Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.843381Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.846647Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:08:57.907516Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.907606Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.908148Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.908528Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.911950Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:08:57.913239Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:08:57.972918Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.973605Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.976866Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:08:58.038096Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038682Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041836Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:08:58.042372Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042797Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.045341Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:08:58.106980Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.107050Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.107080Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.107569Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.107930Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.108212Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.112234Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:08:58.112612Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:08:58.147274Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:08:58.175118Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.175191Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.175221Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.175700Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.176203Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.176662Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.180142Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:08:58.181636Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:08:58.182784Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:08:58.242403Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.242485Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.242967Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.243463Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.246867Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:08:58.248136Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:08:58.275820Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.276316Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.279463Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:08:58.292328Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.292789Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.295453Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:08:58.308714Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.309518Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.309975Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.312786Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:08:58.342474Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.350183Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.714609Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.714689Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.715052Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.717117Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.719193Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:08:58.720405Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:08:58.781718Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.781793Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.845691Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.846112Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.849262Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:08:58.910514Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.910593Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.910994Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.914257Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:08:58.942950Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.357928Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.358425Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.361591Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:08:59.423024Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.423407Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.423572Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.423936Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.424160Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.429415Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:08:59.431312Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:08:59.432339Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:08:59.456224Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.456493Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.459423Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:08:59.460240Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.461586Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.461848Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.465366Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:08:59.493960Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.497371Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.497587Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.500613Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:08:59.529787Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.103953Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:12.382589Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:12.382589Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] 
[2026-06-04T17:09:12.382589Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:12.382679Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] 
[2026-06-04T17:09:12.382691Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:12.382699Z] [nf-c6a26ed25e4e95ee035040995ed090d9-38322-p2k5k] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec