cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144254813, elapsed 0.1s, est remaining 1.0s, peak mem 75MB, user 0.0s, sys 0.2s, output queue size 1556
progress 10% @chr9:37020593, elapsed 0.1s, est remaining 0.9s, peak mem 81MB, user 0.0s, sys 0.4s, output queue size 3787
progress 15% @chr9:96645893, elapsed 0.1s, est remaining 0.8s, peak mem 90MB, user 0.0s, sys 0.5s, output queue size 5555
progress 20% @chr9:128927038, elapsed 0.2s, est remaining 0.8s, peak mem 102MB, user 0.1s, sys 0.8s, output queue size 8173
progress 25% @chr10:14908408, elapsed 0.3s, est remaining 0.8s, peak mem 108MB, user 0.1s, sys 1.2s, output queue size 10925
progress 30% @chr10:69202867, elapsed 0.3s, est remaining 0.7s, peak mem 120MB, user 0.1s, sys 1.4s, output queue size 13314
progress 35% @chr10:100498029, elapsed 0.4s, est remaining 0.7s, peak mem 129MB, user 0.2s, sys 1.6s, output queue size 15971
progress 40% @chr11:308193, elapsed 0.4s, est remaining 0.6s, peak mem 129MB, user 0.2s, sys 1.9s, output queue size 18549
progress 45% @chr11:17995796, elapsed 0.5s, est remaining 0.6s, peak mem 144MB, user 0.3s, sys 2.1s, output queue size 20711
progress 50% @chr11:61421390, elapsed 0.5s, est remaining 0.5s, peak mem 153MB, user 0.3s, sys 2.3s, output queue size 23075
progress 55% @chr11:73000990, elapsed 0.6s, est remaining 0.5s, peak mem 168MB, user 0.3s, sys 2.4s, output queue size 2116
progress 60% @chr11:114407445, elapsed 0.6s, est remaining 0.4s, peak mem 177MB, user 0.4s, sys 2.6s, output queue size 4408
progress 65% @chr12:6457406, elapsed 0.7s, est remaining 0.4s, peak mem 186MB, user 0.4s, sys 2.8s, output queue size 6771
progress 70% @chr12:31672304, elapsed 0.7s, est remaining 0.3s, peak mem 189MB, user 0.4s, sys 2.9s, output queue size 8860
progress 75% @chr12:55961317, elapsed 0.7s, est remaining 0.2s, peak mem 201MB, user 0.4s, sys 3.1s, output queue size 11336
progress 80% @chr12:81134816, elapsed 0.8s, est remaining 0.2s, peak mem 210MB, user 0.5s, sys 3.3s, output queue size 14067
progress 85% @chr12:123783947, elapsed 0.8s, est remaining 0.1s, peak mem 225MB, user 0.5s, sys 3.5s, output queue size 16924
progress 90% @chr13:48459668, elapsed 0.9s, est remaining 0.1s, peak mem 237MB, user 0.6s, sys 3.7s, output queue size 19289
progress 95% @chr14:22771018, elapsed 0.9s, est remaining 0.0s, peak mem 240MB, user 0.6s, sys 3.8s, output queue size 21552
progress 100% @chr14:52727499, elapsed 1.0s, est remaining 0.0s, peak mem 252MB, user 0.7s, sys 4.0s, output queue size 24098
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692764
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.005 sys 0.018 real
advance: 50143 calls 0.001 user 0.016 sys 0.019 real
calc: 98785 calls 0.000 user 0.000 sys 0.017 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.003 sys 1.839 real
fetch: 98785 calls 0.003 user 0.001 sys 0.018 real
fetch_ref: 98785 calls 0.100 user 0.084 sys 0.380 real
idle: 39 calls 0.003 user 0.032 sys 22.969 real
init: 1 calls 0.030 user 0.010 sys 0.042 real
region: 98785 calls 0.000 user 0.000 sys 0.020 real
tracker: 98785 calls 0.054 user 0.005 sys 0.087 real
overall: 264409088 mem 1.199 user 6.279 sys 2.954 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory