File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/71d4c665de28924d6ccfcd0f157c76/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-06-04T17:09:05.406754Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:05.408004Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:05.408023Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:05.408029Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:05.408033Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOlrXyS'
[2026-06-04T17:09:05.408037Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:05.408042Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:05.408046Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:05.408049Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:09:05.408053Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:05.408057Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:05.408061Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:05.408065Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:05.408068Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:05.408814Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:05.408867Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:05.414657Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:05.415345Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:05.415568Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:05.415818Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.416056Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:05.417137Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.417280Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.417364Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.417685Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.418027Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.418275Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.418457Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.418582Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.418743Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.419107Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.419449Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.419686Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.420075Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.420261Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.422178Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:05.422363Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.422543Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.422977Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423048Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423262Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423345Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423477Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423553Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423680Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423750Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.423938Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424302Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424432Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424505Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424621Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424728Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424913Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.424984Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.425106Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.425186Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.425501Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.425905Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426021Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426085Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426194Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426256Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426362Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426436Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426541Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426636Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426749Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426814Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.427300Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.427709Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.427826Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.427895Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428001Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428063Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428171Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428230Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428340Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428404Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428510Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428574Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428686Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428876Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429478Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429546Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429674Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429742Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429852Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429911Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.430018Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.430083Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.430189Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.430250Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.430356Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.430478Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.444426Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.444543Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.444619Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.444811Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.444882Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.444973Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.445039Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.445169Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.445255Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.445302Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:05.450825Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.451573Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.451804Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.452119Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.452496Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.452984Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.453667Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.454335Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.455226Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.459800Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:09:05.465149Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:09:05.468368Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:09:05.468688Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:09:05.471775Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:09:05.475750Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:09:05.571779Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.572704Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.578253Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:09:06.190528Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.191501Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.194209Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:09:06.255640Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.256462Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.259319Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:09:06.273062Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:09:06.273524Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.274231Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.276871Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:09:06.438986Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.439844Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.442657Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:09:06.472302Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.473082Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.476285Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:09:06.505338Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.506078Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.509100Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:09:06.627752Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:09:06.670669Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.670750Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.670774Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.671568Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.672051Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.674029Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.675116Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:09:06.677835Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:09:06.678444Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.679020Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:09:06.679556Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.682209Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:09:06.711614Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.711662Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.712272Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.712746Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.716000Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:09:06.716720Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:09:07.428356Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.429206Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.432184Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:09:07.462534Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.463657Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.464199Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.465124Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.468353Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:09:07.469458Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:09:07.529142Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.529902Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.532318Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:09:07.561863Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.562533Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.565639Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:09:07.596326Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.596983Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.599928Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:09:07.861913Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.862680Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.865945Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:09:07.926908Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.927655Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.930266Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:09:07.944967Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.945666Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.948048Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:09:07.961771Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.962440Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.965326Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:09:07.978490Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.979114Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.981695Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:09:08.043478Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.043568Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.044238Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.044869Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.048011Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:09:08.049199Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:09:08.109213Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.109337Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.109992Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.110485Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.113704Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:09:08.114541Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:09:08.176177Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.176868Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.179377Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:09:08.208943Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.209625Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.212433Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:09:08.323882Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.324686Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.327663Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:09:08.439072Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.439825Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.442799Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:09:08.471806Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.472407Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.474278Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.474961Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.475185Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:09:08.477255Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:09:08.506966Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.507020Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.507044Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.507562Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.509168Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.509675Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.509953Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:09:08.512680Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:09:08.513110Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:09:08.542638Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.542699Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.543328Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.543802Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.548001Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:09:08.548393Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:09:08.609388Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610016Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.613143Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:09:08.642350Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.643063Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.645954Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:09:08.707719Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.708375Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.711363Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:09:08.823326Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.824030Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.826952Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:09:08.856187Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.856758Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.859663Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:09:09.372149Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.372238Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.372856Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.373462Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.376812Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:09:09.377841Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:09:09.407560Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.408168Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.410936Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:09:09.411923Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.411972Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.412428Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.412766Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.415267Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:09:09.416441Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:09:09.445983Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.446041Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.446066Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.446553Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.447014Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.447492Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.451177Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:09:09.452523Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:09:09.453638Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:09:09.481045Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.481527Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.483460Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.484011Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.484326Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:09:09.487108Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:09:09.500021Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.500508Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.503040Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:09:09.516421Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.516847Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.519834Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:09:09.548825Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.548893Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.548919Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.549327Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.549610Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.549866Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.554316Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:09:09.554630Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:09:09.614505Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.614579Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.615003Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.617755Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:09:09.679292Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.743189Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.743647Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.746742Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:09:09.776765Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.091441Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.091932Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.094470Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:09:10.156117Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.270343Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.270802Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.273366Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:09:10.302834Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.567352Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.567851Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.570719Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:09:10.599934Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.408098Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:09:11.415366Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.415415Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.415791Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.418242Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:09:11.447981Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.448211Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.448310Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.448794Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.451247Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.451903Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:11.454806Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:11.456011Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:11.483734Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.483798Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.483819Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.484014Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.484342Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.486823Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:11.487274Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:11.549135Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.549187Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.549340Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.551395Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:11.581291Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:16.004629Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:24.296459Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:24.296459Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] 
[2026-06-04T17:09:24.296459Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:24.296533Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] 
[2026-06-04T17:09:24.296546Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:24.296553Z] [nf-f671d4c665de28924d6ccfcd0f157c76-c4524-4wn6d] [597_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec