cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:166000001, elapsed 0.0s, est remaining 0.8s, peak mem 417MB, user 0.1s, sys 1.8s, output queue size 91
progress 10% @chr1:105000001, elapsed 0.1s, est remaining 0.6s, peak mem 417MB, user 0.3s, sys 4.6s, output queue size 252
progress 15% @chr3:142000001, elapsed 0.1s, est remaining 0.5s, peak mem 417MB, user 0.5s, sys 6.8s, output queue size 414
progress 20% @chr2:92000001, elapsed 0.1s, est remaining 0.5s, peak mem 417MB, user 0.6s, sys 9.2s, output queue size 576
progress 25% @chr4:176000001, elapsed 0.1s, est remaining 0.4s, peak mem 417MB, user 0.8s, sys 13.4s, output queue size 737
progress 30% @chr4:164000001, elapsed 0.2s, est remaining 0.4s, peak mem 417MB, user 0.9s, sys 18.0s, output queue size 898
progress 35% @chr6:95000001, elapsed 0.2s, est remaining 0.4s, peak mem 417MB, user 1.0s, sys 22.9s, output queue size 1059
progress 40% @chr7:87000001, elapsed 0.2s, est remaining 0.4s, peak mem 417MB, user 1.2s, sys 28.1s, output queue size 1220
progress 45% @chr8:82000001, elapsed 0.3s, est remaining 0.3s, peak mem 417MB, user 1.4s, sys 32.8s, output queue size 1383
progress 50% @chr9:47000001, elapsed 0.3s, est remaining 0.3s, peak mem 417MB, user 1.6s, sys 37.2s, output queue size 1544
progress 55% @chr10:101000001, elapsed 0.3s, est remaining 0.3s, peak mem 417MB, user 1.7s, sys 41.2s, output queue size 1705
progress 60% @chr11:129000001, elapsed 0.4s, est remaining 0.2s, peak mem 417MB, user 1.9s, sys 45.4s, output queue size 1867
progress 65% @chr12:126000001, elapsed 0.4s, est remaining 0.2s, peak mem 417MB, user 2.1s, sys 49.8s, output queue size 2029
progress 70% @chr15:38000001, elapsed 0.4s, est remaining 0.2s, peak mem 417MB, user 2.5s, sys 54.3s, output queue size 2191
progress 75% @chr15:89000001, elapsed 0.4s, est remaining 0.1s, peak mem 417MB, user 2.7s, sys 58.8s, output queue size 191
progress 80% @chr15:84000001, elapsed 0.5s, est remaining 0.1s, peak mem 417MB, user 2.9s, sys 62.9s, output queue size 353
progress 85% @chr19:53000001, elapsed 0.5s, est remaining 0.1s, peak mem 417MB, user 3.2s, sys 67.5s, output queue size 516
progress 90% @chrX:83000001, elapsed 0.5s, est remaining 0.1s, peak mem 417MB, user 3.5s, sys 71.8s, output queue size 677
progress 95% @chrX:152000001, elapsed 0.6s, est remaining 0.0s, peak mem 417MB, user 3.8s, sys 76.8s, output queue size 969
progress 100% @HLA-DRB1*10:01:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 417MB, user 3.9s, sys 91.0s, output queue size 4263
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.013 real
"predict_filter": 171 calls 0.027 user 0.006 sys 0.031 real
advance: 3219322 calls 0.315 user 24.802 sys 27.584 real
done: 1 calls 0.002 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.009 sys 0.722 real
fetch_ref: 448 calls 0.008 user 0.089 sys 0.137 real
idle: 20057 calls 0.482 user 0.390 sys 310.042 real
init: 1 calls 0.280 user 0.051 sys 0.557 real
overall: 437587968 mem 5.304 user 95.609 sys 2.392 real