File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/3623e51e810772b26e51e044ca9fe5/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-04T17:08:59.615546Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:59.616458Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:59.616472Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:59.616476Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:59.616480Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxhpXMr'
[2026-06-04T17:08:59.616484Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:59.616490Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:59.616493Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:59.616497Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:08:59.616500Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:59.616504Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:59.616507Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:59.616511Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:59.616515Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:59.617127Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:59.617244Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:59.623275Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:59.624127Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:59.624491Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:59.624827Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:59.625127Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.625775Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.625868Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.625944Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.626065Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.626137Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.626650Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.626884Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.627350Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.627756Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.627927Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.630252Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.630585Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.630834Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.631019Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:59.631433Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.631997Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632223Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632358Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632431Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632626Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632697Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632834Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632939Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.633077Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.633146Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.634051Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.634620Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.634865Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.634968Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.635100Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.635181Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.635504Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.635970Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636097Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636168Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636299Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636368Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636494Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636559Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636684Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636748Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636869Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.636936Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.637131Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.637283Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.637614Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638008Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638190Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638256Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638362Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638427Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638536Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638597Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638710Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638775Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638887Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.638950Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.639154Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.639880Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.640154Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.640235Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.640363Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.640439Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.653738Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.653852Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.653923Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654093Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654169Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654305Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654385Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654512Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654611Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.654678Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:59.661334Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.662024Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.664043Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.664480Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.665267Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.666236Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.667261Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.668551Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.669647Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.674852Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:08:59.676211Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:08:59.682036Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:08:59.682656Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:08:59.685883Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:08:59.688554Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:08:59.689291Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:08:59.839156Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.840000Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.843509Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:08:59.904667Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.905524Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.908918Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:00.020309Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.021128Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.024176Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:00.085415Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.086180Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.089511Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:00.602779Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.603568Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.607500Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:00.768482Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.769293Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.772834Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:09:00.833628Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.833727Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.834528Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.834929Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.838330Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:00.839416Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:00.899223Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.900027Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.903571Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:01.114960Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.115729Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.119220Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:01.180018Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.180712Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.184024Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:01.386790Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:01.395535Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.395613Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.395641Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.396322Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.396816Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.397304Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.400339Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:01.402681Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:01.455662Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:01.462555Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.462622Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.462654Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.463301Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.463610Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.463957Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.467922Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:01.469205Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:01.470394Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:01.496769Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.497446Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.500246Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:01.501073Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.501602Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.504636Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:01.917117Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.918048Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.921284Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:02.032567Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.034001Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.034653Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.035874Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.039309Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:02.087414Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:02.100443Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.100529Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.101526Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.102005Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.105599Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:09:02.106508Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:02.166532Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.166631Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.167438Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.167937Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.170991Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:02.200148Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.201088Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.203699Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:02.224070Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:02.233090Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.233198Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.234375Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.234808Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.235227Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.238024Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.239204Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:02.241819Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:02.242862Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:02.271156Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.271244Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.271886Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.272251Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.276083Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:02.277002Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:02.336319Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.336402Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.337091Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.337840Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.341272Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:02.342341Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:02.402239Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.402327Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.403078Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.403645Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.407265Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:02.408278Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:02.468324Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.469131Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.471899Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:09:02.485109Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.485921Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.488783Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:02.517863Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.517958Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.518476Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.518838Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.522544Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:02.523894Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.524643Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.524929Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:02.527636Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:02.556890Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.557775Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.558070Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.559930Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.561851Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:09:02.562966Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:02.592314Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.592382Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.592811Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.593190Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.596916Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:02.597826Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:02.612827Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.613318Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.616471Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:02.645327Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.645411Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.645847Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.646210Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.649847Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:02.651369Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:02.662469Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.662953Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.665836Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:02.694924Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.696433Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.712341Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.712774Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.715482Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:02.777018Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.777098Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.777521Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.780311Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:02.841729Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.006119Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.006562Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.009559Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:03.071075Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.837975Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.838440Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.841539Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:03.854578Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.854993Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.857946Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:03.887147Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.887841Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.903531Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.903913Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.906617Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:03.967989Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.968258Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.968410Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.968816Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.969344Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.973931Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:03.975194Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:03.976161Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:04.001939Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.002015Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.002238Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.002584Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.004843Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.005439Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:04.007621Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:04.037084Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.037156Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.037359Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.039833Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:04.070570Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.287426Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:10.165329Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:10.165329Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] 
[2026-06-04T17:09:10.165329Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:10.165394Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] 
[2026-06-04T17:09:10.165401Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:10.165406Z] [nf-e53623e51e810772b26e51e044ca9fe5-0cb6b-tf7bv] [608_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec