Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0aa7ea89ef3a0c7521ee480c948e78/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/c3b5b67b68a7170cf95f036711335c/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0aa7ea89ef3a0c7521ee480c948e78/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/3c009dcd7aaa5257601448761dc42f/germline_control_2.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/c3b5b67b68a7170cf95f036711335c/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/3c009dcd7aaa5257601448761dc42f/germline_control_2.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.zpUp1g
Merging 1 temporary files
Done
Cleaning